SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0035
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   385   e-109
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   376   e-106
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   233   1e-63
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   168   4e-44
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  385 bits (947), Expect = e-109
 Identities = 181/196 (92%), Positives = 187/196 (95%)
 Frame = +1

Query: 4   LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
           LPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDN 307

Query: 184 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 363
           VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH
Sbjct: 308 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 367

Query: 364 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 543
           IACKFA+IKEK DRR GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVR
Sbjct: 368 IACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVR 427

Query: 544 DMRQTVAVGVIKAVNF 591
           DMRQTVAVGVIKAV F
Sbjct: 428 DMRQTVAVGVIKAVTF 443


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  376 bits (924), Expect = e-106
 Identities = 175/196 (89%), Positives = 186/196 (94%)
 Frame = +1

Query: 4   LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
           LPLQDVYKIGGIGTVPVGRVETG+LKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDN
Sbjct: 248 LPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307

Query: 184 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 363
           VGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAH
Sbjct: 308 VGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 367

Query: 364 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 543
           IACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVR
Sbjct: 368 IACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVR 427

Query: 544 DMRQTVAVGVIKAVNF 591
           DMRQTVAVGVIK+V F
Sbjct: 428 DMRQTVAVGVIKSVTF 443



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 182 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 75
           L PG     A   ++T++ SV M   A T  +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  233 bits (569), Expect = 1e-63
 Identities = 108/119 (90%), Positives = 113/119 (94%)
 Frame = +1

Query: 130 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 309
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 310 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 486
           PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 61  PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  168 bits (409), Expect = 4e-44
 Identities = 79/84 (94%), Positives = 81/84 (96%)
 Frame = +1

Query: 4   LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
           LPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDN
Sbjct: 191 LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDN 250

Query: 184 VGFNVKNVSVKELRRGYVAGDSKN 255
           VGFNVKNVSVKELRRGYVAGDSKN
Sbjct: 251 VGFNVKNVSVKELRRGYVAGDSKN 274


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 208 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 315
           S ++LR  ++A +   + PKG      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 327 RLHTSLGLPHCPHC 368
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -2

Query: 411 STTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 232
           ST+ N  F   K  G  G   +   CVT     R   HN +  + C      V   + N+
Sbjct: 77  STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136

Query: 231 TTT 223
           T T
Sbjct: 137 TVT 139


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -2

Query: 411 STTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 232
           ST+ N  F   K  G  G   +   CVT     R   HN +  + C      V   + N+
Sbjct: 77  STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136

Query: 231 TTT 223
           T T
Sbjct: 137 TVT 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,892
Number of Sequences: 438
Number of extensions: 4076
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)

- SilkBase 1999-2023 -