Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0012
         (442 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   4.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 237 HWKSFGARLKKDPS*RSG 290
           HW   G RL  +PS R G
Sbjct: 25  HWFRKGLRLHDNPSLREG 42


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 231 PSHWKSFGARLKKDPS*RSGNTVEEETSFQSRMIFPLNLSKSQSVTKVYNQQT 389
           P H       LKK P  R+ NT+  E     +M       ++Q   +   QQT
Sbjct: 379 PQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQT 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,759
Number of Sequences: 438
Number of extensions: 2422
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)