Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a12
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    30   0.016
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.15 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    26   0.27 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.35 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.62 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.82 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   5.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   5.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   5.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.6  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 0.016
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 342 DGHSIYGKSFSHSYTSWRECEGKVQLYLL*VSKPGEVWIL 223
           DG+ +     + SY   + C+G   +Y + V K G +WIL
Sbjct: 98  DGNPLIAPYPNWSYNDVKYCDGLTSVYRMQVDKCGRLWIL 137


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 93  SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 203
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 306 SYTSWRECEGKVQLYLL*VSKPGEVWIL 223
           S+ ++++C G V  Y + + K   +WIL
Sbjct: 115 SWANYKDCSGIVSAYKIAIDKFDRLWIL 142


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 306 SYTSWRECEGKVQLYLL*VSKPGEVWIL 223
           S+ ++++C G V  Y + + K   +W+L
Sbjct: 115 SWANYKDCSGIVSAYKIAIDKFDRLWVL 142


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = -2

Query: 428 YLILDLLFGSQIVSV----SALC--LATVGSTRMKTGIAFTANHFLTVILHGENAKGRFN 267
           +L+   LFG Q +++    +AL   +   G   + +G   +  ++ T+I   +   G  N
Sbjct: 7   WLLSICLFGLQEIAIQPGSNALSRNVEASGQRSVSSGFRSSLRNYKTLISSHDELPGHIN 66

Query: 266 CTSSKSQNQV 237
           C SSK +  +
Sbjct: 67  CDSSKFEEDL 76


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 89  SFRHYRKCQS*NPRQGRYSSRPTTSHLCRETIRRWPHS 202
           S +H  KC +       +SS P  +H CR     W HS
Sbjct: 162 SVKHVAKCAT------DFSSWPYDTHRCRINFGSWVHS 193


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 306 SYTSWRECEGKVQLYLL*VSKPGEVWIL 223
           S+  + +C G V  + + V K   +W+L
Sbjct: 117 SFAKYEDCSGIVSAFKIAVDKFDRLWVL 144


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 16/68 (23%), Positives = 27/68 (39%)
 Frame = +3

Query: 87   EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGT 266
            ++ DT E  K  +Q KEG     Q+  F G  L     + +       T+ ++     G 
Sbjct: 931  KSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEGPAGR 990

Query: 267  IEPSLRIL 290
              PS  ++
Sbjct: 991  SVPSAELI 998


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 16/68 (23%), Positives = 27/68 (39%)
 Frame = +3

Query: 87   EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGT 266
            ++ DT E  K  +Q KEG     Q+  F G  L     + +       T+ ++     G 
Sbjct: 927  KSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEGPAGR 986

Query: 267  IEPSLRIL 290
              PS  ++
Sbjct: 987  SVPSAELI 994


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 294 WRECEGKVQLYLL 256
           W++CEGK+  YL+
Sbjct: 200 WKQCEGKID-YLV 211


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 306 SYTSWRECEGKVQLYLL*VSKPGEVWIL 223
           S+  + +C G V    L + K   +W+L
Sbjct: 111 SFAKYDDCSGIVSASKLAIDKCDRLWVL 138


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 306 SYTSWRECEGKVQLYLL*VSKPGEVWIL 223
           S+  + +C G V    L + K   +W+L
Sbjct: 111 SFAKYDDCSGIVSASKLAIDKCDRLWVL 138


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 306 SYTSWRECEGKVQLYLL*VSKPGEVWIL 223
           S+  + +C G V    L + K   +W+L
Sbjct: 111 SFAKYDDCSGIVSASKLAIDKCDRLWVL 138


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/28 (21%), Positives = 15/28 (53%)
 Frame = -1

Query: 306 SYTSWRECEGKVQLYLL*VSKPGEVWIL 223
           S+  + +C G V  + + + +   +W+L
Sbjct: 116 SFAKYEDCSGIVSAHKIAIDEYERLWVL 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,360
Number of Sequences: 438
Number of extensions: 3108
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)