Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a11
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   1.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   1.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 473  EYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATH 616
            E+ L + NL +   +  +     + G    ++  +QH  EGV E   H
Sbjct: 1039 EHHLQIMNLKTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVPEQPPH 1086


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 331 FSI*LVHSIICISVIFKF-NKTIS 263
           FSI  +HSI  I +IF + N+TI+
Sbjct: 5   FSIMFIHSIFLILIIFIYSNETIA 28


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 331 FSI*LVHSIICISVIFKF-NKTIS 263
           FSI  +HSI  I +IF + N+TI+
Sbjct: 5   FSIMFIHSIFLILIIFIYSNETIA 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,401
Number of Sequences: 438
Number of extensions: 3293
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)