Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120073.Seq
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.84 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.84 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    25   0.84 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   7.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 137 NLQICSKFYVWQYSLKQHIFQFCMS*QFSLSCYH 36
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 82  SLRTPSNLFVINLAISNFLMMFCMSPPMVINCYY 115


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 137 NLQICSKFYVWQYSLKQHIFQFCMS*QFSLSCYH 36
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 48  SLRTPSNLFVINLAISDFLMMFCMSPPMVINCYY 81


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 557 CA*TIPCEGKKYWTLQRICLC 619
           C+  +   G K W ++R C+C
Sbjct: 57  CSSYLQVSGSKIWQMERSCMC 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 11  IVTEYKYDND-NKKVKIVRTYKIEKCVVSKSIA 106
           +V +Y YD D NK+  I     I KCVV   +A
Sbjct: 100 VVAQY-YDTDVNKEYAIRGNSAILKCVVPSFVA 131


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 155 QACRWLNLQICSKFYVWQYSLKQHI 81
           QA +  + + C K YV   +LK HI
Sbjct: 12  QAKKSFSCKYCEKVYVSLGALKMHI 36


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 495 YTDGSYVFTTHRGL 454
           Y DG+ VF  H G+
Sbjct: 799 YIDGNVVFVCHNGM 812


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,104
Number of Sequences: 438
Number of extensions: 2952
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)