Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A08
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.68 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.68 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 464 NCGGPGNSSAGSAV 505
           N GGPG+SSAG  V
Sbjct: 18  NLGGPGSSSAGGVV 31



 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 238 LRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQ 333
           L ++ V +  + G+WL     +PK   +A+V+
Sbjct: 62  LSLVVVTVAISTGEWLLTEEKLPKTSSNASVE 93


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -2

Query: 604  VGTQRRRSSRPVKQQGLGFVERHLRSQPSDPCDDG*TCGAVSRPTAV-SYESYQIW 440
            VG       RP  +  LG++    R  P  P  +  TC  + R T + S  S+  W
Sbjct: 1627 VGGATLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKRGTVIRSIRSHSTW 1682


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 237 IENARCPNPESSRTVAK 287
           I N RC NP++ RT  K
Sbjct: 411 ILNTRCENPDNDRTPFK 427


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 237 IENARCPNPESSRTVAK 287
           I N RC NP++ RT  K
Sbjct: 411 ILNTRCENPDNDRTPFK 427


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 237 IENARCPNPESSRTVAK 287
           I N RC NP++ RT  K
Sbjct: 411 ILNTRCENPDNDRTPFK 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,323
Number of Sequences: 438
Number of extensions: 5465
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)