Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40033
         (846 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21215.1 68416.m02681 RNA-binding protein, putative contains ...    30   2.2  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    29   3.9  

>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
           recognition motif, Pfam:PF00076; contains AT-AC splice
           sites at intron 8
          Length = 339

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 840 ARFNIPPQPFHTGPPIKGPRD*APLGRAKYGAPLINIPVGRL 715
           A ++ PP P  T PPI  P    P+   K   P   + +G L
Sbjct: 199 AGYHAPPVPMPTPPPIAAPSSYVPVQNIKDNPPCNTLFIGNL 240


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 816 PFHTGPPIKGPRD*APLGRAKYGAPLINI 730
           P    PP +GPRD  PLG    G   +NI
Sbjct: 818 PVIASPPGEGPRDAGPLGAGSLGISPLNI 846


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,949,654
Number of Sequences: 28952
Number of extensions: 194894
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)