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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40011
         (360 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    62   8e-11
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    62   8e-11
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    62   8e-11
At3g10440.1 68416.m01252 hypothetical protein                          28   1.6  
At2g14010.1 68415.m01557 hypothetical protein  and genefinder          27   3.8  
At5g09590.1 68418.m01110 heat shock protein 70 / HSP70 (HSC70-5)...    27   5.0  
At1g06660.1 68414.m00706 expressed protein                             27   5.0  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    26   6.6  
At3g26260.1 68416.m03276 Ulp1 protease family protein contains P...    26   6.6  
At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transfera...    26   6.6  
At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transfera...    26   6.6  
At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transfera...    26   6.6  
At2g37100.1 68415.m04552 protamine P1 family protein contains Pf...    26   6.6  
At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family...    26   6.6  
At1g21475.1 68414.m02687 hypothetical protein                          26   6.6  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 30/50 (60%), Positives = 35/50 (70%)
 Frame = +3

Query: 9   LPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 158
           L SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF
Sbjct: 113 LASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161



 Score = 33.9 bits (74), Expect = 0.033
 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +2

Query: 224 KKREIRSI*AGKTD-QKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 358
           +K E + I  GK D QK VD A+IKAI A P+   L+ YL A F L
Sbjct: 180 EKEEKKEIPQGKKDDQKAVDAALIKAIEAVPE---LKTYLGARFSL 222


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 30/50 (60%), Positives = 35/50 (70%)
 Frame = +3

Query: 9   LPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 158
           L SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF
Sbjct: 113 LASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161



 Score = 33.5 bits (73), Expect = 0.043
 Identities = 22/45 (48%), Positives = 28/45 (62%)
 Frame = +2

Query: 224 KKREIRSI*AGKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 358
           +K+EI  +   K DQK VD A+IKAI A P+   L+ YL A F L
Sbjct: 183 EKKEIPQV--KKDDQKAVDAALIKAIEAVPE---LKTYLGARFSL 222


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +3

Query: 9   LPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXX 188
           L SGLLLVTGPF  N  PLRR+ Q YVIGTST+I +      K F+D YF          
Sbjct: 113 LSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF---GKVAEKK 168

Query: 189 XXXXEGDDIFATKKE-KYVPSEQ 254
               EG+   A K+E K +P E+
Sbjct: 169 KKKTEGEFFEAEKEEKKEIPQEK 191



 Score = 34.3 bits (75), Expect = 0.025
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = +2

Query: 257 KTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 358
           K DQKTVD A+IK+I A P+ KV   YL A F L
Sbjct: 192 KEDQKTVDAALIKSIEAVPELKV---YLGARFSL 222


>At3g10440.1 68416.m01252 hypothetical protein
          Length = 556

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 249 EQAKPIRRQSTRL*SKPSEPDPTRRCSADTSKR 347
           E   P+RR+S RL S+  EP  +   S +T+KR
Sbjct: 307 ESRFPLRRRSARLKSQEPEPSESFHDSIETTKR 339


>At2g14010.1 68415.m01557 hypothetical protein  and genefinder
          Length = 833

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 307 GSDGFDHSLVDCLLIGFACSDGTYFSFFV 221
           G  GFDH L++C   GF   +  YF F V
Sbjct: 731 GMYGFDHDLLECTHSGF---ERVYFPFLV 756


>At5g09590.1 68418.m01110 heat shock protein 70 / HSP70 (HSC70-5)
           identical to heat shock protein 70 [Arabidopsis
           thaliana] GI:6746590
          Length = 682

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 355 SEGRFEVSAEHLLVGSGSDGFDHSLVDCLLIGFACSDG 242
           S G FEV A +     G + FD++L+D L+  F  ++G
Sbjct: 261 SNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKTTEG 298


>At1g06660.1 68414.m00706 expressed protein
          Length = 481

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
 Frame = +1

Query: 115 SATSNCQNTSMMITSR---RIRSASN----VQSNAKRVMTSLPQKKRNTFHLSRQNRSED 273
           S TS    +S +I  R   RI SAS+    V+S    +   L +  R TF   + N+S  
Sbjct: 166 SFTSEQTASSCVIDVRDNARISSASSDGTEVESVGTAIKGELDRTARPTFTAGK-NKSVR 224

Query: 274 SRRGCDQSHRSPTRQEGAPRIPQSG 348
                DQS+ S + + G+ R P+ G
Sbjct: 225 FECDLDQSNSSNSSENGSSRKPEMG 249


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 243 PSEQAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSD 356
           PS  + P +  +T     P  P P    S D S  PSD
Sbjct: 279 PSPSSSPAQSPATPSPMTPQSPSPVSSPSPDQSAAPSD 316


>At3g26260.1 68416.m03276 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 989

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 307 GSDGFDHSLVDCLLIGFACSDGTYFSFFV 221
           G  GFDH L++C   GF      YF F V
Sbjct: 845 GMYGFDHDLLECTPSGFG---RVYFPFLV 870


>At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 462

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 29  SYWTFCFQFVPA-TPYSSALCDRHLHQN 109
           S+ +  F  +PA TPYSS+   RH H++
Sbjct: 60  SFPSITFHHLPAVTPYSSSSTSRHHHES 87


>At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 446

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 29  SYWTFCFQFVPA-TPYSSALCDRHLHQN 109
           S+ +  F  +PA TPYSS+   RH H++
Sbjct: 60  SFPSITFHHLPAVTPYSSSSTSRHHHES 87


>At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 451

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 29  SYWTFCFQFVPA-TPYSSALCDRHLHQN 109
           S+ +  F  +PA TPYSS+   RH H++
Sbjct: 60  SFPSITFHHLPAVTPYSSSSTSRHHHES 87


>At2g37100.1 68415.m04552 protamine P1 family protein contains Pfam
           PF00260: Protamine P1
          Length = 297

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 216 FATKKEKYVPSEQAKPIRRQSTRL*SKPSEPDPTRR 323
           F+ K EK   S +++PI  +ST    +P EP+ TR+
Sbjct: 133 FSKKSEKRSSSSRSEPIFGRST---VEPEEPEETRK 165


>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
           protein
          Length = 523

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 19/84 (22%), Positives = 33/84 (39%)
 Frame = +1

Query: 91  SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSE 270
           S PPPE     ++  +             S      K ++ S P ++ +   + R     
Sbjct: 186 SPPPPESKPGQADPPDNIFNALGNEFSHPSGA-GRGKPLVESAPIRQEDNRQIRRPPPPP 244

Query: 271 DSRRGCDQSHRSPTRQEGAPRIPQ 342
             +R   Q  R+PT ++G P+ PQ
Sbjct: 245 QQQRVQPQQKRAPTVKDGTPK-PQ 267


>At1g21475.1 68414.m02687 hypothetical protein
          Length = 181

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 136 NTSMMITSRR--IRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGC 288
           ++S   TSRR  I +A N +SNA + +  L +     F   +     D  RGC
Sbjct: 2   SSSSSQTSRRPYISAALNSRSNAAKTLNELIKIHGLEFAFKKDGVKRDMERGC 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,962,678
Number of Sequences: 28952
Number of extensions: 146835
Number of successful extensions: 495
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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