Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40003
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    30   1.3  
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    28   6.7  
At2g09900.1 68415.m01028 hypothetical protein                          28   6.7  
At4g39730.1 68417.m05624 lipid-associated family protein contain...    27   8.8  
At3g06340.1 68416.m00731 DNAJ heat shock N-terminal domain-conta...    27   8.8  
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ...    27   8.8  
At2g22170.1 68415.m02633 lipid-associated family protein contain...    27   8.8  

>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 590 CGGHCPGFEYVCY 628
           CG HCPG+ Y C+
Sbjct: 674 CGNHCPGYSYYCH 686


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 330 YQLPQYYVGGRNDDPPSPVYQSPYGGG 410
           Y  P+   GGR   PP P  +  YGGG
Sbjct: 9   YSPPRRGYGGRGRSPPPPPPRRGYGGG 35


>At2g09900.1 68415.m01028 hypothetical protein
          Length = 175

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = +1

Query: 283 HQCIRPALIVQYQKTHINYHSTMLVEGMMILHPLYTNPLMEEEHGGVTVKHKKFICKTHI 462
           H   R + ++   ++H   HSTM      +   +   PL      G  V   K +  +  
Sbjct: 36  HSTTRSSALISITRSH---HSTMRSS---VFTSIIRQPLDLVNQPGSRVSPDKHLITS-- 87

Query: 463 VSHNV-LQHFHCHYTIRTQCSTFE 531
           + H V   H HC  T R  CST++
Sbjct: 88  LDHEVECLHLHCQTTTRPHCSTWK 111


>At4g39730.1 68417.m05624 lipid-associated family protein contains
           PLAT/LH2 (Polycystin-1, Lipoxygenase,
           Alpha-Toxin/Lipoxygenase homology) domain Pfam:PF01477
          Length = 181

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 SVYQAGTDSSISENAYQLPQYYVGGRN 365
           S+++AGTDS IS   Y     Y+G +N
Sbjct: 39  SIWKAGTDSIISARIYDKDGDYIGIKN 65


>At3g06340.1 68416.m00731 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 673

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/74 (24%), Positives = 28/74 (37%)
 Frame = +1

Query: 127 KIQNSVNFKMFKHQLSSRNVHSYQTTVVPRSNQQILSAAEQRASFHGLMI*THQCIRPAL 306
           K Q   N+    H  +S N  +  T + P        A  Q A+F  L      C+   +
Sbjct: 143 KAQQMPNYHTQPHFRASVNTRNIFTELRPEIRHPFQKAQAQPAAFTHLKTFGTSCVFCRV 202

Query: 307 IVQYQKTHINYHST 348
             +Y + H+N   T
Sbjct: 203 RYEYDRAHVNKEVT 216


>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
 Frame = -1

Query: 447 YELFVLYCNSAMFLLHKGIGIQGMEDHHSFHQHSTVV-IDMRFLILNYQCRP---DTLMG 280
           YE  +  C    F+LH+          H+ H H  V+ +   F    ++C      ++  
Sbjct: 362 YEGNLYVCMECDFILHETCAKAPRRIQHALHPHPLVLEVINSFTYNTFRCNACDRGSIGF 421

Query: 279 LYHQPMETCSLF 244
            YH  ME C+ F
Sbjct: 422 AYHCRMEVCNFF 433


>At2g22170.1 68415.m02633 lipid-associated family protein contains
           PLAT/LH2 (Polycystin-1, Lipoxygenase,
           Alpha-Toxin/Lipoxygenase homology) domain Pfam:PF01477
          Length = 183

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 285 SVYQAGTDSSISENAYQLPQYYVGGRN 365
           S ++AGTDS IS   Y     Y+G RN
Sbjct: 41  STFKAGTDSIISARVYDKYGDYIGIRN 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,213,984
Number of Sequences: 28952
Number of extensions: 330808
Number of successful extensions: 885
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)