Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30035X
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein...    30   0.90 
At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein...    30   0.90 
At1g74490.1 68414.m08629 protein kinase, putative similar to pro...    30   0.90 
At1g01780.1 68414.m00097 LIM domain-containing protein similar t...    29   1.6  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    29   2.8  
At5g65310.1 68418.m08216 homeobox-leucine zipper protein 5 (HB-5...    27   6.4  
At2g29090.1 68415.m03536 cytochrome P450 family protein similar ...    27   6.4  
At2g07340.2 68415.m00842 prefoldin-related KE2 family protein co...    27   6.4  
At2g07340.1 68415.m00841 prefoldin-related KE2 family protein co...    27   6.4  

>At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1260

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -3

Query: 511 IESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN*RNA 347
           +E    +L+SA   +E KN D+      LLQ+N+   +E+RE  +D+   N + A
Sbjct: 802 LEVLAQDLDSAESTIESKNSDML-----LLQNNLKELEELREMKEDIDRKNEQTA 851


>At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1259

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -3

Query: 511 IESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN*RNA 347
           +E    +L+SA   +E KN D+      LLQ+N+   +E+RE  +D+   N + A
Sbjct: 801 LEVLAQDLDSAESTIESKNSDML-----LLQNNLKELEELREMKEDIDRKNEQTA 850


>At1g74490.1 68414.m08629 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695; contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 399

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 178 HLQYLSMNNYLACLHHLNVISCIFMSVGMKNNI*LSIVHRKKNGSIKHNI 29
           H ++L   NYL  LHH N++  I  S  ++N   L +     NGS+++++
Sbjct: 133 HKEWLREVNYLGRLHHPNLVKLIGYS--LENEHRLLVYEHLPNGSLENHL 180


>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 205

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 190 CIIIHLQYLSMNNYLACLHHLNVISCIFMSVGMKNNI*LSIVHRK 56
           C + H  Y S+++ L C HH N    +FM  G   ++  +  HR+
Sbjct: 136 CTLTHSSYASLDSVLYCRHHFNQ---LFMEKGNYAHVLQAANHRR 177


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 226 DQYHKVSV--SFK*CIIIHLQYLSMNNYLACLHHLNVISCIFMSVGMKNNI*LSIVHRKK 53
           + YHK     +   C + H  Y S+N  L C  H N    +F+  G  N++  +  + ++
Sbjct: 124 ESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQ---LFLEKGSYNHVHQAAANHRR 180

Query: 52  NGS 44
           + S
Sbjct: 181 SAS 183


>At5g65310.1 68418.m08216 homeobox-leucine zipper protein 5 (HB-5) /
           HD-ZIP transcription factor 5 identical to
           homeobox-leucine zipper protein ATHB-5 (HD-ZIP protein
           ATHB-5) (SP:P46667) [Arabidopsis thaliana]
          Length = 312

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 514 IIESTLDELNSALDFLERKNDDIHQQLKEL 425
           +++S  D L    D L+R ND +  Q+KEL
Sbjct: 135 VLKSNFDALKRNRDSLQRDNDSLLGQIKEL 164


>At2g29090.1 68415.m03536 cytochrome P450 family protein similar to
           Cytochrome P450 88A3 (SP:O23051) [Arabidopsis thaliana];
           similar to taxane 13-alpha-hydroxylase (GI:17148242)
           [Taxus cuspidata].
          Length = 482

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -3

Query: 514 IIESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVS 368
           +I +  D   S L +L +   D    L+E+ +   +IRQ++++EN+ +S
Sbjct: 291 VIFAATDTTASVLTWLLKYLHDHPNLLQEVSREQFSIRQKIKKENRRIS 339


>At2g07340.2 68415.m00842 prefoldin-related KE2 family protein
           contains similarity to Swiss-Prot:O60925 prefoldin
           subunit 1 [Homo sapiens]; contains Pfam domain, PF01920:
           KE2 family protein
          Length = 127

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = -3

Query: 508 ESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEM 392
           E+ +  L ++ ++LE++  ++   L+ELLQ    I Q++
Sbjct: 84  EAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIAQQI 122


>At2g07340.1 68415.m00841 prefoldin-related KE2 family protein
           contains similarity to Swiss-Prot:O60925 prefoldin
           subunit 1 [Homo sapiens]; contains Pfam domain, PF01920:
           KE2 family protein
          Length = 128

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = -3

Query: 508 ESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEM 392
           E+ +  L ++ ++LE++  ++   L+ELLQ    I Q++
Sbjct: 85  EAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIAQQI 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,645,051
Number of Sequences: 28952
Number of extensions: 170526
Number of successful extensions: 452
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)