Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30024
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53910.1 68414.m06137 AP2 domain-containing protein RAP2.12 (...    30   1.5  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   3.4  
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    29   4.4  
At1g56660.1 68414.m06516 expressed protein                             29   4.4  
At5g01460.1 68418.m00059 LMBR1 integral membrane family protein ...    28   5.9  
At5g51650.1 68418.m06404 hypothetical protein                          28   7.7  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   7.7  
At1g51610.1 68414.m05814 cation efflux family protein / metal to...    28   7.7  

>At1g53910.1 68414.m06137 AP2 domain-containing protein RAP2.12
           (RAP2.12) identical to AP2 domain containing protein
           GI:2281649 from [Arabidopsis thaliana]
          Length = 358

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 176 GKEGRGYQGSREAS-DRKRQEEHHGLRHQLWTKDGKEI 286
           GK+  G  G  E S +RKR+ ++ G+R + W K   EI
Sbjct: 103 GKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEI 140


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 287 VKSYFPIQFRVIFTEQTVKLINKR-DHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP 463
           V S + +QF V  +   +  IN R D HAL ++ + + +K+ F D    +    +  F P
Sbjct: 76  VPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVDHHSSSLVLEAVSFLP 135

Query: 464 VLENNRV 484
             E  R+
Sbjct: 136 KDERPRL 142


>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 370 GVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 278
           G  +P +  +D + G+DH   + + RFD+FL
Sbjct: 221 GEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 173 EGKEGRGYQGSREASDRKRQEEHHGLRHQLWTKDGKE 283
           +GK+ +G +G  E  D ++++EH     ++  KD K+
Sbjct: 213 KGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKK 249


>At5g01460.1 68418.m00059 LMBR1 integral membrane family protein
           contains Pfam PF04791: LMBR1-like conserved region
          Length = 509

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 167 ISEGKE-GRGYQGSREASDRKRQEEHHGLRHQLWTKDGKEIVKSYFPIQFRVIFTEQ 334
           I E  E G+  +  ++A+D   QEE  G + + W K+ K + K    ++  V   E+
Sbjct: 253 IKEATELGKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEE 309


>At5g51650.1 68418.m06404 hypothetical protein 
          Length = 206

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 167 ISEGKEGRGYQGSREASDRKRQEEHHGLRHQLWTKDGKEIVKSYFPI 307
           + E KEG   QG  E  ++   E+     H  W KDG   V   + I
Sbjct: 38  VQERKEGLEAQGKEEGVEKVLVEKEKEEAHVSWEKDGSVSVAYTYAI 84


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 417 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRQTVP 521
           +P T P   +PG  PP   TT     S P   T P
Sbjct: 467 SPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTP 501


>At1g51610.1 68414.m05814 cation efflux family protein / metal
           tolerance protein, putative (MTPc4) member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 457

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 257 GGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGD-SGLVFTN 129
           GG VH   LA+FD+  +GF+D     F  + R+     GL+ TN
Sbjct: 25  GGSVHF--LALFDEKDNGFVDTTHRSFSSLIRSSSHVRGLISTN 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,914,305
Number of Sequences: 28952
Number of extensions: 365114
Number of successful extensions: 1332
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)