Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30019
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)           103   9e-23
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi...   103   1e-22
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo...   102   2e-22
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    28   3.9  
At3g56410.2 68416.m06274 expressed protein                             28   5.1  
At3g56410.1 68416.m06273 expressed protein                             28   5.1  

>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
          Length = 150

 Score =  103 bits (247), Expect = 9e-23
 Identities = 50/71 (70%), Positives = 56/71 (78%)
 Frame = +3

Query: 54  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
           M+ RK K  K +V VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 234 KVKADRDKRHP 266
           KVKADRD+  P
Sbjct: 60  KVKADRDESSP 70



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 35/65 (53%), Positives = 42/65 (64%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QDVA++CK LGITA+H+KLRA            AQ          MKIGRIEDVTP+P+D
Sbjct: 78  QDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTD 137

Query: 467 STRRR 481
           STRR+
Sbjct: 138 STRRK 142


>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
           to 40S ribosomal protein S14 GB:P19950 [Zea mays]
          Length = 150

 Score =  103 bits (246), Expect = 1e-22
 Identities = 50/71 (70%), Positives = 55/71 (77%)
 Frame = +3

Query: 54  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
           M+ RK K  K E  VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 234 KVKADRDKRHP 266
           KVKADRD+  P
Sbjct: 60  KVKADRDESSP 70



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 35/65 (53%), Positives = 42/65 (64%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QDVA++CK LGITA+H+KLRA            AQ          MKIGRIEDVTP+P+D
Sbjct: 78  QDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTD 137

Query: 467 STRRR 481
           STRR+
Sbjct: 138 STRRK 142


>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
           ribosomal protein S14 -Zea mays,PIR2:A30097
          Length = 150

 Score =  102 bits (244), Expect = 2e-22
 Identities = 49/71 (69%), Positives = 55/71 (77%)
 Frame = +3

Query: 54  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 233
           M+ RK K  K E  VTLGP    GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 234 KVKADRDKRHP 266
           KVKADRD+  P
Sbjct: 60  KVKADRDESSP 70



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 35/65 (53%), Positives = 42/65 (64%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 466
           QDVA++CK LGITA+H+KLRA            AQ          MKIGRIEDVTP+P+D
Sbjct: 78  QDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTD 137

Query: 467 STRRR 481
           STRR+
Sbjct: 138 STRRK 142


>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 440 EDVTPVPSDSTRRRVAEEDAGC 505
           + +TPVP++ T   + EE+A C
Sbjct: 182 DQITPVPAEETEEEIPEEEAVC 203


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 274  YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 432
            Y  G+ C  E +NSW   +   A     + N +P+ W S   +     +YE W
Sbjct: 1040 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1090


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 274  YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 432
            Y  G+ C  E +NSW   +   A     + N +P+ W S   +     +YE W
Sbjct: 993  YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1043


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,822,825
Number of Sequences: 28952
Number of extensions: 241138
Number of successful extensions: 591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)