Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10404
(565 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 124 3e-29
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 124 3e-29
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ... 29 2.8
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 28 5.0
At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 5.0
At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 5.0
At1g28470.1 68414.m03501 no apical meristem (NAM) family protein... 27 6.5
At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p... 27 8.7
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to... 27 8.7
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to... 27 8.7
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P... 27 8.7
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 124 bits (300), Expect = 3e-29
Identities = 56/65 (86%), Positives = 62/65 (95%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
KK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 435 ERPRS 449
E+PRS
Sbjct: 138 EKPRS 142
Score = 122 bits (293), Expect = 2e-28
Identities = 55/80 (68%), Positives = 65/80 (81%)
Frame = +1
Query: 22 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
MGK RG+ RK R QRWADK++KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 202 QPNSAIRKCVRVQLIKNGRK 261
QPNSAIRKC RVQLIKNG+K
Sbjct: 60 QPNSAIRKCARVQLIKNGKK 79
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 124 bits (300), Expect = 3e-29
Identities = 56/65 (86%), Positives = 62/65 (95%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
KK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 435 ERPRS 449
E+PRS
Sbjct: 138 EKPRS 142
Score = 113 bits (271), Expect = 1e-25
Identities = 53/80 (66%), Positives = 62/80 (77%)
Frame = +1
Query: 22 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
MGK RG+ RK R QRWADK +KK++ G +WK PF +SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59
Query: 202 QPNSAIRKCVRVQLIKNGRK 261
QPNSAIRKC RVQLIKNG+K
Sbjct: 60 QPNSAIRKCARVQLIKNGKK 79
>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 289
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 384 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALFI 500
VV++ +SL Y KKE+ + +++ D+L A+F+
Sbjct: 80 VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 249 ERKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 407
E KK + VP+ + E D+V GF K V D+P + +VV + NVS
Sbjct: 820 EEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 85 WADKEFKKAHMGTKWKANPFGGASHAKG 168
W+ F+ A + T W+ +PFG A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602
>At1g32940.1 68414.m04057 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 774
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 85 WADKEFKKAHMGTKWKANPFGGASHAKG 168
W+ F+ A + T W+ +PFG A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599
>At1g28470.1 68414.m03501 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAM protein GI:6066594 from [Petunia hybrida]
Length = 314
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 306 LRCGLGNRHGGRMRSLSSVLNELYTDAFADGRVGLLSF 193
++ G G HGG+ + V+ EL DG LSF
Sbjct: 263 IQAGFGYEHGGKSEETTQVIRELVVRE-GDGSCSFLSF 299
>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide acetyltransferase
(E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
contains Pfam profiles PF00198: 2-oxo acid
dehydrogenases acyltransferase (catalytic domain),
PF00364: Biotin-requiring enzyme, PF02817: e3 binding
domain; supporting cDNA
gi|5881964|gb|AF066080.1|AF066080
Length = 637
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 130 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK*PH 270
K P +S +K V + PNS IRK + +L+++ +K PH
Sbjct: 386 KETPSKSSSTSKPSVTQSDNNYEDFPNSQIRKIIAKRLLESKQKIPH 432
>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1158
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 249 ERKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 407
E KK + VP+ + E D+ GF K V D+P + +VV + NVS
Sbjct: 868 EEKKSSPKVPKKVKKQLVYEQDDAHPHGFKAKTVLVPDVPAQQIEVVIRAGNVS 921
>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1139
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 249 ERKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 407
E KK + VP+ + E D+ GF K V D+P + +VV + NVS
Sbjct: 849 EEKKSSPKVPKKVKKQLVYEQDDAHPHGFKAKTVLVPDVPAQQIEVVIRAGNVS 902
>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1383
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 249 ERKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 407
E KK + VP+ + E D+ GF K V D+P + +VV + NVS
Sbjct: 820 EEKKSSPKVPKKVKKQLVYEQDDAHPHGFKAKTVLVPDVPAQQIEVVIRAGNVS 873
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,040,345
Number of Sequences: 28952
Number of extensions: 283749
Number of successful extensions: 712
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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