Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10398
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g32590.1 68418.m03867 myosin heavy chain-related similar to M...    29   2.8  
At5g15890.1 68418.m01859 expressed protein                             29   3.7  
At3g13700.1 68416.m01731 RNA-binding protein, putative similar t...    29   3.7  
At4g18570.1 68417.m02749 proline-rich family protein common fami...    28   4.9  
At1g68330.1 68414.m07805 expressed protein                             28   4.9  
At4g38550.1 68417.m05458 expressed protein                             28   6.5  
At3g13220.1 68416.m01654 ABC transporter family protein contains...    28   6.5  
At5g35604.1 68418.m04242 hypothetical protein                          27   8.6  
At3g05900.1 68416.m00664 neurofilament protein-related similar t...    27   8.6  
At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S...    27   8.6  

>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 761

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 97  TSTQSRRVCTRETPSMTSGPPPPAGDSPRTGA 2
           T  Q+ R      PS + GPPPP   SP +G+
Sbjct: 383 TRAQTDRSPRLSAPSRSMGPPPPVTVSPSSGS 414


>At5g15890.1 68418.m01859 expressed protein
          Length = 526

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -3

Query: 257 HLNLVPNSAPRPARDHEPVPPYAVIRAHRHPDY 159
           HLN   N  P P     P PPY     HR   +
Sbjct: 57  HLNSSSNQIPSPVNGSIPTPPYHTPSKHRKSSF 89


>At3g13700.1 68416.m01731 RNA-binding protein, putative similar to
           mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam
           profile:PF00076  rrm:RNA recognition motif
          Length = 296

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 212 HEPVPPYAVIRAHRHPDYKPP 150
           H+P  P+ V + H HP + PP
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPP 24


>At4g18570.1 68417.m02749 proline-rich family protein common family
           members: At3g25690, At4g04980, At5g61090 [Arabidopsis
           thaliana]
          Length = 642

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = -3

Query: 242 PNSAPRPARDHEPVPPYAVIRAHRHPDYKPPSKYNDIALLELDRQVPLDQYTVPACLHTG 63
           P   P P    +P PP +V +A   P   PP K   IA  ++ R+VP +       L   
Sbjct: 312 PPPPPPPPLLQQPPPPPSVSKAPPPPPPPPPPKSLSIASAKV-RRVP-EVVEFYHSLMRR 369

Query: 62  DAVNDERASATG 27
           D+ N  R S  G
Sbjct: 370 DSTNSRRDSTGG 381


>At1g68330.1 68414.m07805 expressed protein
          Length = 268

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 278 KAIVKQKHLNLVPNSAPRPARDHEPVPPYAVIRAHRHPDYKPP 150
           K +++  H     NS P P  D  P   +   + H  P +KPP
Sbjct: 156 KGLIRSFHFLSRSNSTPNPNLDLLPKETHHPHKTHNLPKHKPP 198


>At4g38550.1 68417.m05458 expressed protein
          Length = 612

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -3

Query: 251 NLVPNSAPRPARDHEPVPPYAVIRAHRHPDYKPPSKYND--IALLELDRQVPLDQYTVPA 78
           N  P S   PA  H P PP    + +R PD++   + N+   A+ ELD  +   +   P+
Sbjct: 275 NSSPPSPLHPAASHSPPPP----QPYRTPDHRRSHQDNEDFEAMYELDGDLIHQKSAPPS 330

Query: 77  CLH 69
            +H
Sbjct: 331 PVH 333


>At3g13220.1 68416.m01654 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter; similar to white
           protein GB:Q27256 [Anopheles gambiae]
          Length = 685

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 232 AEFGTRFKCFCFTIALIMSLC-QR*CKGQFIGTYLLSAIVKHAHMI 366
           AEF     CF FT+  I+ +       G+F+G  +LS  +K A MI
Sbjct: 536 AEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLS--IKRAGMI 579


>At5g35604.1 68418.m04242 hypothetical protein
          Length = 298

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 58  PSMTSGPPPPAGDSP 14
           PS T GPPPP   SP
Sbjct: 99  PSRTMGPPPPVATSP 113


>At3g05900.1 68416.m00664 neurofilament protein-related similar to
           NF-180 (GI:632549) [Petromyzon marinus] similar to
           Neurofilament triplet H protein (200 kDa neurofilament
           protein) (Neurofilament heavy polypeptide) (NF-H)
           (Swiss-Prot:P12036) [Homo sapiens]
          Length = 673

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 287 DII-KAIVKQKHLNLVPNSAPRPARDHEPVPPYAVIRAHRHPDYKP 153
           D+I KAI ++KH+   P +  +P+     + P  V+  ++  D KP
Sbjct: 343 DVIEKAITEEKHVVDEPANEEKPSESSAALSPEKVVPINQDSDTKP 388


>At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S)
           family protein similar to SP|O23627 Glycyl-tRNA
           synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)
           {Arabidopsis thaliana}; contains Pfam profile PF00587:
           tRNA synthetase class II core domain (G, H, P, S and T);
           contains non-consensus TA acceptor splice site at intron
           4
          Length = 463

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 170 HPDYKPPSKYNDIALLEL 117
           HP++K  SK++D+A LEL
Sbjct: 296 HPEHKSHSKFSDVAKLEL 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,427,361
Number of Sequences: 28952
Number of extensions: 262121
Number of successful extensions: 1078
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)