Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10388
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo... 133 8e-32
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro... 133 8e-32
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 130 6e-31
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo... 130 8e-31
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo... 128 3e-30
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative 90 8e-19
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim... 66 1e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 46 1e-05
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 29 2.7
At4g05520.2 68417.m00839 calcium-binding EF hand family protein ... 29 2.7
At4g05520.1 68417.m00838 calcium-binding EF hand family protein ... 29 2.7
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 27 8.1
>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 133 bits (321), Expect = 8e-32
Identities = 57/66 (86%), Positives = 63/66 (95%)
Frame = +3
Query: 246 LEKMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 425
L MIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSS
Sbjct: 87 LRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSS 146
Query: 426 RFIPLK 443
RFIPLK
Sbjct: 147 RFIPLK 152
Score = 92.3 bits (219), Expect = 2e-19
Identities = 43/74 (58%), Positives = 53/74 (71%)
Frame = +1
Query: 31 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 210
KKR F+KF ++GVDLD LLDM + L++L GL RKPMAL+KKLR+AK+EA
Sbjct: 15 KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74
Query: 211 PPNEKPEIVKTHLR 252
P EKPE V+THLR
Sbjct: 75 PAGEKPEPVRTHLR 88
>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
similarity to Oryza 40S ribosomal protein S15. ESTs
gb|R29788,gb|ATTS0365 come from this gene
Length = 152
Score = 133 bits (321), Expect = 8e-32
Identities = 57/66 (86%), Positives = 63/66 (95%)
Frame = +3
Query: 246 LEKMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 425
L MIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSS
Sbjct: 87 LRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSS 146
Query: 426 RFIPLK 443
RFIPLK
Sbjct: 147 RFIPLK 152
Score = 92.3 bits (219), Expect = 2e-19
Identities = 43/74 (58%), Positives = 53/74 (71%)
Frame = +1
Query: 31 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 210
KKR F+KF ++GVDLD LLDM + L++L GL RKPMAL+KKLR+AK+EA
Sbjct: 15 KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74
Query: 211 PPNEKPEIVKTHLR 252
P EKPE V+THLR
Sbjct: 75 PQGEKPEPVRTHLR 88
>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)
Length = 149
Score = 130 bits (314), Expect = 6e-31
Identities = 56/66 (84%), Positives = 63/66 (95%)
Frame = +3
Query: 246 LEKMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 425
L MIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SS
Sbjct: 84 LRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSS 143
Query: 426 RFIPLK 443
RFIPLK
Sbjct: 144 RFIPLK 149
Score = 87.8 bits (208), Expect = 4e-18
Identities = 43/74 (58%), Positives = 51/74 (68%)
Frame = +1
Query: 31 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 210
KKR F+KF++RGVDLD LLDM E L++ GL RKPMAL+KKLR+AK EA
Sbjct: 12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71
Query: 211 PPNEKPEIVKTHLR 252
P EKP V+THLR
Sbjct: 72 PAGEKPASVRTHLR 85
>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 150
Score = 130 bits (313), Expect = 8e-31
Identities = 55/66 (83%), Positives = 63/66 (95%)
Frame = +3
Query: 246 LEKMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 425
L MIIVPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SS
Sbjct: 85 LRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSS 144
Query: 426 RFIPLK 443
RFIPLK
Sbjct: 145 RFIPLK 150
Score = 89.8 bits (213), Expect = 1e-18
Identities = 43/74 (58%), Positives = 52/74 (70%)
Frame = +1
Query: 31 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 210
KKR F+KF++RGVDLD LLDM + L++L GL RKPMAL+KKLR+AK EA
Sbjct: 13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72
Query: 211 PPNEKPEIVKTHLR 252
P EKP V+THLR
Sbjct: 73 PAGEKPAAVRTHLR 86
>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 128 bits (308), Expect = 3e-30
Identities = 53/66 (80%), Positives = 62/66 (93%)
Frame = +3
Query: 246 LEKMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 425
L M+I+PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKPV+HG+PG GATHSS
Sbjct: 87 LRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSS 146
Query: 426 RFIPLK 443
RFIPLK
Sbjct: 147 RFIPLK 152
Score = 97.9 bits (233), Expect = 4e-21
Identities = 45/76 (59%), Positives = 56/76 (73%)
Frame = +1
Query: 25 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 204
L KKR F+KF+++GVDLD LLDMP + L+EL GL RKPMAL+KKLR+AK
Sbjct: 13 LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72
Query: 205 EAPPNEKPEIVKTHLR 252
+AP EKPE+V+THLR
Sbjct: 73 DAPAGEKPEVVRTHLR 88
>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
Length = 160
Score = 90.2 bits (214), Expect = 8e-19
Identities = 43/70 (61%), Positives = 52/70 (74%), Gaps = 4/70 (5%)
Frame = +3
Query: 246 LEKMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA---- 413
L MIIVPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K V H RP I
Sbjct: 91 LRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCF 150
Query: 414 THSSRFIPLK 443
S+RFIPL+
Sbjct: 151 RRSTRFIPLR 160
Score = 78.6 bits (185), Expect = 3e-15
Identities = 39/76 (51%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Frame = +1
Query: 31 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 210
KKR F+KF++RG ++D LL M N L +L + GLK++P+ L+KKLRRAKKEA
Sbjct: 17 KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76
Query: 211 PPNE--KPEIVKTHLR 252
KPE+VKTHLR
Sbjct: 77 SDENKMKPEVVKTHLR 92
>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
similar to SP|Q08112 40S ribosomal protein S15
{Arabidopsis thaliana}
Length = 70
Score = 66.1 bits (154), Expect = 1e-11
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +1
Query: 31 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 204
KKRIF+KF++RGVDLD LLDM E L++ G RKPMAL+KKLR+A K
Sbjct: 12 KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +3
Query: 225 ARDREDSLEKMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 398
A +R+ + I+PE V S V IYNGKT + +I +GH GEF+ T K KH +
Sbjct: 153 ALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 327 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 428
+KPE+ G Y E Y P+K PG ++ SSR
Sbjct: 20 MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53
>At4g05520.2 68417.m00839 calcium-binding EF hand family protein
similar to EH-domain containing protein 1 from {Mus
musculus} SP|Q9WVK4, {Homo sapiens} SP|Q9H4M9,
receptor-mediated endocytosis 1 from [Caenorhabditis
elegans] GI:13487775, GI:13487777, GI:13487779; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 545
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 243 SLEKMIIVPEMVGSIVGIYNGKTFNQVEIKP 335
SL K++ PE+V +G +N K N+V + P
Sbjct: 377 SLGKVLNTPEVVRVYIGSFNDKPINEVAVGP 407
>At4g05520.1 68417.m00838 calcium-binding EF hand family protein
similar to EH-domain containing protein 1 from {Mus
musculus} SP|Q9WVK4, {Homo sapiens} SP|Q9H4M9,
receptor-mediated endocytosis 1 from [Caenorhabditis
elegans] GI:13487775, GI:13487777, GI:13487779; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 546
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 243 SLEKMIIVPEMVGSIVGIYNGKTFNQVEIKP 335
SL K++ PE+V +G +N K N+V + P
Sbjct: 378 SLGKVLNTPEVVRVYIGSFNDKPINEVAVGP 408
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 135 ARTGMH*FHELLIGHI--KELIEINSPVSELPENTLFL 28
A TG H F E+L+G + K +I + V LPE L L
Sbjct: 758 AHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLIL 795
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,446,946
Number of Sequences: 28952
Number of extensions: 194916
Number of successful extensions: 500
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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