Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20117
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14580.1 68417.m02244 CBL-interacting protein kinase 4 (CIPK4...    29   2.5  
At5g24110.1 68418.m02833 WRKY family transcription factor              27   10.0 

>At4g14580.1 68417.m02244 CBL-interacting protein kinase 4 (CIPK4)
           identical to CBL-interacting protein kinase 4
           [Arabidopsis thaliana] gi|13249503|gb|AAG01367;
           identical to cDNA calcineurin B-like (CBL) interacting
           protein kinase 4 (CIPK4) GI:13249502
          Length = 426

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 291 ETARELGHGAGRRPHVSRSI*VGRLIIVQLL 383
           E  R LG G+  + HV+RSI  G L+ ++++
Sbjct: 22  ELGRRLGSGSFAKVHVARSISTGELVAIKII 52


>At5g24110.1 68418.m02833 WRKY family transcription factor
          Length = 303

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 239 NQVRFHSNLDSIDRAIRLYLLRKHQHLPNLHSP 141
           NQ + H NLD +  ++  Y  + H H  NLH P
Sbjct: 190 NQTQEHGNLDMVKESVDNYNHQAHLH-HNLHYP 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,475,118
Number of Sequences: 28952
Number of extensions: 277095
Number of successful extensions: 657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)