Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20115
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    51   1e-06
At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family pr...    30   2.1  
At2g46900.1 68415.m05857 expressed protein contains Pfam profile...    29   3.6  
At3g04260.1 68416.m00450 SAP domain-containing protein contains ...    29   4.8  
At3g22740.1 68416.m02868 homocysteine S-methyltransferase 3 (HMT...    28   8.3  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
            protein contains Pfam profile: PF03130 PBS lyase
            HEAT-like repeat
          Length = 1116

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/91 (27%), Positives = 48/91 (52%)
 Frame = +2

Query: 236  QQTIN*NFERATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSF 415
            +Q +  +  R  ER ++   ED+D    E + +E+ ++     +V ++L  L+  ++ SF
Sbjct: 817  KQVMTASSSRKRERGERAHAEDFDAEEGELIKEENEQEEEIFDQVGEILGTLVKTFKASF 876

Query: 416  YPHFDTLLPHLVQLLAPNRPYSDRQWAICIF 508
             P FD L  +L  +   ++   +R+ AICIF
Sbjct: 877  LPFFDELSSYLTPMWGRDKTAEERRIAICIF 907



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 27/69 (39%), Positives = 34/69 (49%)
 Frame = +1

Query: 505  FYDIIEFGGPACVKYQDIFLEPMLNALRESEPEVRQAAAYGCGVLAQFGDVQFAAACARA 684
            F D+ E    A  KY D +L  +L A  +  PEVRQAA YG GV A+FG   F      A
Sbjct: 907  FDDVAEQCREAAFKYYDTYLPFVLEACNDESPEVRQAAVYGLGVCAEFGGSVFKPLIGEA 966

Query: 685  VPLFGALSQ 711
            +     + Q
Sbjct: 967  LSRLNVVIQ 975



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 14/45 (31%), Positives = 30/45 (66%)
 Frame = +3

Query: 51  RGPQYIQGMWAYIVPELLKAIDSEPEQEVQVELLNSLAKCIELLG 185
           R   Y++ +  YI+P +L+A+  EP+ E+ V +L ++ +C+++ G
Sbjct: 757 RDLSYLKQLSDYIIPAMLEALHKEPDTEICVSMLEAINECLQISG 801


>At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 811

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 562 LEPMLNALRESEPEVRQAAAYGCGVLAQFGDVQFAAA 672
           L+P+L  L E  PE + + A+  GVLA   DV+   A
Sbjct: 275 LQPLLAKLLEGSPETKVSMAFYLGVLALNNDVKVIVA 311


>At2g46900.1 68415.m05857 expressed protein contains Pfam profile
           PF04910: Protein of unknown function, DUF654
          Length = 627

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 293 DEDYDEVLEEQLADEDNEDVYSLSRVAD 376
           DED +E+ +E +A++ NED    S VAD
Sbjct: 49  DEDPEEIDDETIAEKKNEDADHQSSVAD 76


>At3g04260.1 68416.m00450 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 913

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 260 ERATERRQKRADEDYDEVLEEQLADEDNED 349
           E+A E   K AD + D+  EEQ  DED+++
Sbjct: 643 EKAIEDISKEADNEEDDDEEEQEGDEDDDE 672


>At3g22740.1 68416.m02868 homocysteine S-methyltransferase 3 (HMT-3)
           identical to homocysteine S-methyltransferase HMT-3
           [Arabidopsis thaliana] GI:9966515; similar to
           homocysteine S-methyltransferase AtHMT-2 (GI:6685163)
           [Arabidopsis thaliana]; similar to selenocysteine
           methyltransferase GB:P56707 from [Astragalus bisulcatus]
          Length = 347

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 359 NCTHPHYLHQLIVLLR 312
           NCT P Y+H LI+ LR
Sbjct: 250 NCTAPRYIHALIISLR 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,500,331
Number of Sequences: 28952
Number of extensions: 340571
Number of successful extensions: 1140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)