Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20113
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39060.1 68415.m04801 nodulin MtN3 family protein similar to ...    29   4.4  
At2g35610.1 68415.m04365 expressed protein                             29   4.4  

>At2g39060.1 68415.m04801 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 258

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -3

Query: 280 YNIKVLKKKIEVSIRANTAGSVEDLPFYQLDYN*YFTKVKSFFLFIIL---YHTIPTIIL 110
           Y++ V    + V  +     SVE +PF  L  +     V  FF  +++   +  +P I+ 
Sbjct: 140 YSLAVFASPLSVMRKVIKTKSVEYMPFL-LSLSLTLNAVMWFFYGLLIKDKFIAMPNILG 198

Query: 109 FLYTISYIVIYKMH 68
           FL+ ++ +++Y M+
Sbjct: 199 FLFGVAQMILYMMY 212


>At2g35610.1 68415.m04365 expressed protein
          Length = 644

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 455 KHKVEI*IILSTHQPHPLNCNALLFWAQINRPVVLPHITLFLTFIYYWLPG 303
           KH +E   IL  HQ   +  +AL   + +NR +V+P I   L  +++  PG
Sbjct: 418 KHTIESHFILVNHQMKQIR-SALAIASLLNRTLVMPPIWCRLDRLWFGHPG 467


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,773,741
Number of Sequences: 28952
Number of extensions: 293202
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)