Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20106
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 100 1e-21
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 95 5e-20
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 89 3e-18
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 87 8e-18
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 85 4e-17
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 82 3e-16
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 81 7e-16
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 71 8e-13
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 54 9e-08
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 52 5e-07
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 49 3e-06
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 49 3e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 49 4e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 49 4e-06
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 49 4e-06
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 49 4e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 6e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 48 6e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 48 6e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 47 1e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 47 1e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 45 4e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 45 4e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 45 4e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 45 6e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 44 8e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 44 8e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 44 8e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 44 8e-05
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 44 1e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 43 2e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 43 2e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 43 2e-04
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 42 3e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 42 4e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 42 4e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 42 5e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 42 5e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 42 5e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 42 5e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 42 5e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 41 7e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 41 7e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 41 7e-04
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 41 0.001
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 41 0.001
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 41 0.001
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 41 0.001
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 0.001
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 40 0.001
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 40 0.001
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 40 0.002
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 40 0.002
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 40 0.002
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 40 0.002
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 40 0.002
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 39 0.003
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 39 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 39 0.004
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 39 0.004
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 38 0.005
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 38 0.005
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 38 0.005
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 38 0.005
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 38 0.005
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 38 0.005
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 38 0.007
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 38 0.007
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 38 0.009
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 38 0.009
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 38 0.009
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 37 0.012
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 37 0.012
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 37 0.015
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 37 0.015
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 37 0.015
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 37 0.015
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 37 0.015
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 37 0.015
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 37 0.015
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.020
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.027
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.027
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 36 0.027
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 36 0.027
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 36 0.027
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 36 0.035
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 36 0.035
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 36 0.035
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 35 0.047
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 35 0.047
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 35 0.047
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 35 0.062
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 34 0.081
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 34 0.081
At2g15500.1 68415.m01774 hypothetical protein 34 0.081
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 34 0.11
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 34 0.11
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 33 0.14
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 33 0.14
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 33 0.14
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 33 0.14
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 33 0.14
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 33 0.14
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 33 0.14
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 33 0.19
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 33 0.19
At1g23540.1 68414.m02960 protein kinase family protein contains ... 33 0.19
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 33 0.19
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 33 0.25
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 33 0.25
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 33 0.25
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c... 33 0.25
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c... 33 0.25
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 32 0.33
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 32 0.33
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 32 0.33
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.43
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 32 0.43
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 32 0.43
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 32 0.43
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 32 0.43
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 32 0.43
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 32 0.43
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 31 0.57
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 31 0.57
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.76
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 31 0.76
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 31 0.76
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 31 0.76
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 31 0.76
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.76
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 31 0.76
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 31 0.76
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 31 1.0
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 31 1.0
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 31 1.0
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 31 1.0
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 31 1.0
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 31 1.0
At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 30 1.3
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 30 1.3
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 30 1.3
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 30 1.3
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 30 1.3
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 30 1.8
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 30 1.8
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 30 1.8
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 30 1.8
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 30 1.8
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 2.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 2.3
At2g38250.1 68415.m04697 DNA-binding protein-related contains si... 29 2.3
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 29 2.3
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 2.3
At1g31250.1 68414.m03825 proline-rich family protein contains pr... 29 2.3
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 29 2.3
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 29 3.1
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 29 3.1
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 29 3.1
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 29 3.1
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 3.1
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 29 3.1
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 29 3.1
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 29 3.1
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 29 3.1
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 29 3.1
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 29 4.0
At4g12440.2 68417.m01969 adenine phosphoribosyltransferase, puta... 29 4.0
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 29 4.0
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 4.0
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 29 4.0
At3g21770.1 68416.m02746 peroxidase 30 (PER30) (P30) (PRXR9) ide... 29 4.0
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 4.0
At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 4.0
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 28 5.3
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 28 5.3
At5g07820.1 68418.m00896 expressed protein 28 5.3
At5g06640.1 68418.m00750 proline-rich extensin-like family prote... 28 5.3
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 28 5.3
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 28 5.3
At3g10650.1 68416.m01281 expressed protein 28 5.3
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 28 5.3
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 28 5.3
At1g54215.1 68414.m06180 proline-rich family protein contains pr... 28 5.3
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 28 5.3
At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family... 28 5.3
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 28 5.3
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 28 7.1
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 28 7.1
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro... 28 7.1
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 28 7.1
At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family... 28 7.1
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 7.1
At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof... 28 7.1
At2g35230.2 68415.m04322 VQ motif-containing protein contains PF... 28 7.1
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF... 28 7.1
At2g31090.1 68415.m03797 expressed protein 28 7.1
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 27 9.3
At5g55565.1 68418.m06925 expressed protein 27 9.3
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 27 9.3
At5g09790.1 68418.m01133 PHD finger family protein / SET domain-... 27 9.3
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 27 9.3
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 27 9.3
At4g08400.1 68417.m01388 proline-rich extensin-like family prote... 27 9.3
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 9.3
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom... 27 9.3
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ... 27 9.3
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 27 9.3
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 100 bits (239), Expect = 1e-21
Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
+ APFGTITS KVM + G S+G GFV FS+PEEAT+A+TEMNG+++ TKPLYVALAQR
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQR 404
Query: 423 KEDRKAHL 446
KEDRKA L
Sbjct: 405 KEDRKARL 412
Score = 80.6 bits (190), Expect = 9e-16
Identities = 41/75 (54%), Positives = 52/75 (69%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 189
GFV FE+ D A RA LNGK + K +VG+AQKK+ER+ ELK+KFEQ E + Q
Sbjct: 267 GFVNFENSDDAARAVDALNGKTF-DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQ 325
Query: 190 GVNLYVKNLDDTIDD 234
G NLYVKNLD+++ D
Sbjct: 326 GSNLYVKNLDESVTD 340
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +1
Query: 1 RHEGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 165
R GFVAF P+ A RA E+NGK +V KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 367 RGSGFVAFSTPEEATRAITEMNGKMIVT-KPLYVALAQRKEDRKARLQAQFSQMR 420
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 FGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
FG TS +M + +G+SKGFGFV F + ++A +AV +NG+ K +V AQ+K +R+
Sbjct: 247 FGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERE 306
Query: 438 AHL 446
L
Sbjct: 307 TEL 309
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
+ + FG I S KV ++ G+SKG+GFV + + E A A+ ++NG ++ K +YV
Sbjct: 151 ETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 32.7 bits (71), Expect = 0.25
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 189
GFV ++ +AA+ A +LNG L+ K +YVG K +R E++K
Sbjct: 176 GFVQYDTDEAAQGAIDKLNGM-LLNDKQVYVGPFVHKLQRDP----SGEKVKF------- 223
Query: 190 GVNLYVKNLDDTIDD 234
N+YVKNL +++ D
Sbjct: 224 -TNVYVKNLSESLSD 237
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +3
Query: 264 GTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
G + S +V + RS G+G+V +++P++A++A+ E+N + + + V + R
Sbjct: 69 GQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVR 123
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 94.7 bits (225), Expect = 5e-20
Identities = 41/68 (60%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
+ + +G +TS+KVML G S+GFGFV +S+PEEA +A++EMNG+++G KPLY+ALAQR
Sbjct: 350 EMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQR 409
Query: 423 KEDRKAHL 446
KEDR+AHL
Sbjct: 410 KEDRRAHL 417
Score = 84.2 bits (199), Expect = 8e-17
Identities = 42/75 (56%), Positives = 55/75 (73%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 189
GFV FE +AA A ++NG L + LYVGRAQKK+ER++EL+RKFEQ + R + Q
Sbjct: 272 GFVNFECTEAAASAVEKMNGISLGDDV-LYVGRAQKKSEREEELRRKFEQERINRFEKSQ 330
Query: 190 GVNLYVKNLDDTIDD 234
G NLY+KNLDD++DD
Sbjct: 331 GANLYLKNLDDSVDD 345
Score = 54.0 bits (124), Expect = 9e-08
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 FGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
FG I+SA VM + G S+ FGFV F E A AV +MNG +G LYV AQ+K +R+
Sbjct: 252 FGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSERE 311
Query: 438 AHL 446
L
Sbjct: 312 EEL 314
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
+ + FGTI S KV ++ GRSKG+GFV F E A A+ ++NG ++ K ++V R
Sbjct: 154 ETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 423 KEDR 434
+++R
Sbjct: 214 RQER 217
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/53 (43%), Positives = 37/53 (69%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 168
GFVA+ +P+ A RA E+NGK ++ KPLY+ AQ+K +R+ L+ F Q+++
Sbjct: 375 GFVAYSNPEEALRALSEMNGK-MIGRKPLYIALAQRKEDRRAHLQALFSQIRA 426
Score = 36.3 bits (80), Expect = 0.020
Identities = 26/75 (34%), Positives = 40/75 (53%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 189
GFV FE ++A+ A +LNG L+ K ++VG ++ ER ++ E + R T
Sbjct: 179 GFVQFEKEESAQAAIDKLNGM-LMNDKQVFVGHFIRRQERARD-----ENTPTPRFT--- 229
Query: 190 GVNLYVKNLDDTIDD 234
N+YVKNL I +
Sbjct: 230 --NVYVKNLPKEIGE 242
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
+ + +G +TS KVM+ G S+GFGFV +S+PEEA A+ EMNG+++G KPLYVALAQR
Sbjct: 346 EMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQR 405
Query: 423 KEDRKAHL 446
KE+R+AHL
Sbjct: 406 KEERQAHL 413
Score = 83.0 bits (196), Expect = 2e-16
Identities = 42/78 (53%), Positives = 56/78 (71%)
Frame = +1
Query: 1 RHEGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT 180
R GFV F P+AA A ++NG L E LYVGRAQKK++R++EL+RKFEQ + R
Sbjct: 265 RSFGFVNFVSPEAAAVAVEKMNGISLGEDV-LYVGRAQKKSDREEELRRKFEQERISRFE 323
Query: 181 RYQGVNLYVKNLDDTIDD 234
+ QG NLY+KNLDD+++D
Sbjct: 324 KLQGSNLYLKNLDDSVND 341
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 FGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
+G I+SA VM + G S+ FGFV F SPE A AV +MNG +G LYV AQ+K DR+
Sbjct: 248 YGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDRE 307
Query: 438 AHL 446
L
Sbjct: 308 EEL 310
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
+ + FGTI S KV ++ GRSKG+GFV F E A A+ ++NG ++ K ++V R
Sbjct: 150 ETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR 209
Query: 423 KEDR 434
++DR
Sbjct: 210 RQDR 213
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 168
GFVA+ +P+ A A E+NGK ++ KPLYV AQ+K ERQ L+ F Q++S
Sbjct: 371 GFVAYSNPEEALLAMKEMNGK-MIGRKPLYVALAQRKEERQAHLQSLFTQIRS 422
Score = 32.3 bits (70), Expect = 0.33
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 189
GFV FE + A+ A +LNG L+ K ++VG ++ +R +SE
Sbjct: 175 GFVQFEKEETAQAAIDKLNGM-LLNDKQVFVGHFVRRQDR----------ARSESGAVPS 223
Query: 190 GVNLYVKNLDDTIDD 234
N+YVKNL I D
Sbjct: 224 FTNVYVKNLPKEITD 238
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 87.4 bits (207), Expect = 8e-18
Identities = 38/65 (58%), Positives = 57/65 (87%), Gaps = 1/65 (1%)
Frame = +3
Query: 255 APFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
+PFGT+TS+KVM + +G SKG GFV F++PEEAT+A+++++G+++ +KPLYVA+AQRKED
Sbjct: 153 SPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKED 212
Query: 432 RKAHL 446
R+ L
Sbjct: 213 RRVRL 217
Score = 75.8 bits (178), Expect = 3e-14
Identities = 39/75 (52%), Positives = 50/75 (66%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 189
GFV FE+ D A RA LNG + + K YVGRAQKK+ER+ EL+ ++EQ E ++Q
Sbjct: 72 GFVNFENADDAARAVESLNGHKF-DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQ 130
Query: 190 GVNLYVKNLDDTIDD 234
NLYVKNLD +I D
Sbjct: 131 SSNLYVKNLDPSISD 145
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 FGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
+G ITSA VM + +G+SKGFGFV F + ++A +AV +NG K YV AQ+K +R+
Sbjct: 52 YGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERE 111
Query: 438 AHL 446
L
Sbjct: 112 TEL 114
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/52 (46%), Positives = 36/52 (69%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 165
GFVAF P+ A A +L+GK ++E KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 175 GFVAFATPEEATEAMSQLSGK-MIESKPLYVAIAQRKEDRRVRLQAQFSQVR 225
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 85.0 bits (201), Expect = 4e-17
Identities = 41/75 (54%), Positives = 55/75 (73%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 189
GFV FE+P+ A RA LNGK+ + K YVG+AQKK+ER+ EL R++EQ S+ ++
Sbjct: 268 GFVNFENPEDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFD 326
Query: 190 GVNLYVKNLDDTIDD 234
G+NLYVKNLDDT+ D
Sbjct: 327 GLNLYVKNLDDTVTD 341
Score = 85.0 bits (201), Expect = 4e-17
Identities = 42/65 (64%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +3
Query: 255 APFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
A FGTITS KVM + G SKG GFV FS+ EA++ + EMNG++VG KPLYVALAQRKE+
Sbjct: 349 AEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEE 408
Query: 432 RKAHL 446
R+A L
Sbjct: 409 RRAKL 413
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 261 FGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
+G+I+SA VM + DG+S+ FGFV F +PE+A +AV +NG+ K YV AQ+K +R+
Sbjct: 248 YGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERE 307
Query: 438 AHLT 449
L+
Sbjct: 308 LELS 311
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 165
GFVAF A R E+NGK +V GKPLYV AQ+K ER+ +L+ +F Q++
Sbjct: 371 GFVAFSAASEASRVLNEMNGK-MVGGKPLYVALAQRKEERRAKLQAQFSQMR 421
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +3
Query: 264 GTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 440
GTI S KV + G+S+G+GFV F + + A A+ ++NG+++ K ++V RKE+R++
Sbjct: 158 GTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES 217
Score = 37.9 bits (84), Expect = 0.007
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 1 RHEGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKEL-KRKFEQLKSERL 177
R GFV F+ D+A+ A +LNGK ++ K ++VG +K ER+ K KF
Sbjct: 174 RGYGFVQFDTEDSAKNAIEKLNGK-VLNDKQIFVGPFLRKEERESAADKMKF-------- 224
Query: 178 TRYQGVNLYVKNLDD-TIDD 234
N+YVKNL + T DD
Sbjct: 225 -----TNVYVKNLSEATTDD 239
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Frame = +3
Query: 264 GTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 440
GTITS K+M ++ G+SKGFGFVCFS+PEEA AV +G++ KPLYVA+AQ+KEDRK
Sbjct: 328 GTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKM 387
Query: 441 HL 446
L
Sbjct: 388 QL 389
Score = 58.4 bits (135), Expect = 4e-09
Identities = 31/78 (39%), Positives = 49/78 (62%)
Frame = +1
Query: 1 RHEGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT 180
R FV F++P+ A RA +NG + K LYVGRAQKKAER++ L+ +F++ E+
Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKF-GSKCLYVGRAQKKAEREQLLREQFKEKHEEQKM 299
Query: 181 RYQGVNLYVKNLDDTIDD 234
+ N+YVKN++ + +
Sbjct: 300 IAKVSNIYVKNVNVAVTE 317
Score = 54.0 bits (124), Expect = 9e-08
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 FGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
FG I S KV LEDG+S+G+GFV F + A A+ +N IV K +YV +K DR
Sbjct: 135 FGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
++ A FG I S + ++ R +G+ FV F +PE+A +A +NG G+K LYV AQ+
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQK 278
Query: 423 KEDRK 437
K +R+
Sbjct: 279 KAERE 283
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 153
GFV F P+ A A +G ++ GKPLYV AQKK +R+ +L+ +F
Sbjct: 347 GFVCFSTPEEAIDAVKTFHG-QMFHGKPLYVAIAQKKEDRKMQLQVQF 393
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/78 (38%), Positives = 38/78 (48%)
Frame = +1
Query: 1 RHEGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT 180
R GFV FE DAA A LN +V K +YVG+ KK +R K E+ T
Sbjct: 152 RGYGFVQFEQEDAAHAAIQTLNST-IVADKEIYVGKFMKKTDRVKP---------EEKYT 201
Query: 181 RYQGVNLYVKNLDDTIDD 234
NLY+KNLD + +
Sbjct: 202 -----NLYMKNLDADVSE 214
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 255 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
A F ++TS ++ + GRS +G+ F S ++A A+ + N ++ K + V + R
Sbjct: 45 AEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAP 104
Query: 429 DRK 437
D +
Sbjct: 105 DAR 107
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 81.0 bits (191), Expect = 7e-16
Identities = 40/63 (63%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 FGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
FGTITS KVM+ +G SKG GFV FS+ EEA+KA+ +MNG++VG KP+YV+LAQ KE K
Sbjct: 246 FGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHK 305
Query: 438 AHL 446
HL
Sbjct: 306 LHL 308
Score = 70.5 bits (165), Expect = 1e-12
Identities = 39/79 (49%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = +1
Query: 1 RHEGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER-L 177
R GFV FE +AA A ++NG +V+ K L+VGRAQ+K R ++LK KFE K R +
Sbjct: 159 RRFGFVNFEKAEAAVTAIEKMNGV-VVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDM 217
Query: 178 TRYQGVNLYVKNLDDTIDD 234
+G+NLYVKNLDD++D+
Sbjct: 218 KTRKGMNLYVKNLDDSVDN 236
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 FGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
FG ITSA VM + +G+S+ FGFV F E A A+ +MNG +V K L+V AQRK +R
Sbjct: 142 FGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRT 201
Query: 438 AHL 446
L
Sbjct: 202 EDL 204
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 153
GFV F + A +A +++NGK +V KP+YV AQ K + + L+ +F
Sbjct: 266 GFVEFSTSEEASKAMLKMNGK-MVGNKPIYVSLAQCKEQHKLHLQTQF 312
Score = 31.5 bits (68), Expect = 0.57
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 261 FGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
FG + S KV + G SKG+GFV F S A NG ++ + ++V
Sbjct: 54 FGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHV 103
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/59 (59%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 FGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
+G I SAKVM E+GRSKGFGFVCFS+ EE+ +A +NG +V KP+ V +A+RKEDR
Sbjct: 327 YGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/61 (45%), Positives = 41/61 (67%)
Frame = +3
Query: 258 PFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
PFG+I S KV+ E+G+SKGFGFV F + + A A + ++G +V K L+VA K++R
Sbjct: 134 PFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERA 193
Query: 438 A 440
A
Sbjct: 194 A 194
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 FGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
+GT++S VM + GRS+GFGFV F +PE A KA+ + G +G+K L+V A +K++R+
Sbjct: 225 YGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERR 284
Query: 438 AHL 446
L
Sbjct: 285 EML 287
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERLTRY 186
GFV F +P+ A++A L G +L K L+VG+A KK ER++ LK+KF + ++ R+
Sbjct: 245 GFVNFCNPENAKKAMESLCGLQL-GSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRW 303
Query: 187 QGVNLYVKNLDDTIDD 234
NLYVKNL +++++
Sbjct: 304 S--NLYVKNLSESMNE 317
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/49 (40%), Positives = 33/49 (67%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 156
GFV F + + +++A LNG LV+GKP+ V A++K +R K L++ F+
Sbjct: 347 GFVCFSNCEESKQAKRYLNGF-LVDGKPIVVRVAERKEDRIKRLQQYFQ 394
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/75 (32%), Positives = 34/75 (45%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 189
GFV F+ +A A L+G +V GK L+V + K ER +
Sbjct: 154 GFVQFDTEQSAVSARSALHGS-MVYGKKLFVAKFINKDER------------AAMAGNQD 200
Query: 190 GVNLYVKNLDDTIDD 234
N+YVKNL +T+ D
Sbjct: 201 STNVYVKNLIETVTD 215
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +1
Query: 13 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 192
++ F+ P +A A LN +L +GK + + +Q+ L R TR
Sbjct: 66 YINFDSPFSASNAMTRLNHSDL-KGKAMRIMWSQR-------------DLAYRRRTRTGF 111
Query: 193 VNLYVKNLDDTI 228
NLYVKNLD +I
Sbjct: 112 ANLYVKNLDSSI 123
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
+G++ AKV+L+ GRSKG+GFV F+ E +A+TEMNG+ T+P+ + A K
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 234
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 120
GFV F D + RA E+NG + +P+ +G A K
Sbjct: 199 GFVRFADENEQMRAMTEMNG-QYCSTRPMRIGPAANK 234
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = +3
Query: 246 QRIAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
Q +PFG I A+++ E R KGFGF+ F S ++A KA+ ++G+IV + ++V +A+
Sbjct: 25 QLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAK 84
Query: 420 RKEDRKA 440
E+ +A
Sbjct: 85 NAEEVRA 91
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAE 126
GF+ F+ D A +A L+GK +V+G+ ++V A+ E
Sbjct: 51 GFITFDSEDDARKALKSLDGK-IVDGRLIFVEVAKNAEE 88
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 243 AQRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 416
++ A F T AKV+ + G++KG+GFV F +P + A+ EMNG+ VG +P+ + +
Sbjct: 154 SKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKS 213
Query: 417 QRKE 428
KE
Sbjct: 214 SWKE 217
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +3
Query: 255 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
A FG + A+V+ + GRSKGFGFV +++ E+A KA EMN + + ++V A+ +E
Sbjct: 55 ASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPRE 114
Query: 429 DRK 437
R+
Sbjct: 115 PRR 117
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +3
Query: 246 QRIAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
Q FG +T A V+ E GRS+GFGFV FS + A A+ EM+G+ + + + V LA
Sbjct: 53 QAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLAT 112
Query: 420 RK 425
+
Sbjct: 113 ER 114
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA 123
GFV+F D+A A E++GKEL G+ + V A +++
Sbjct: 79 GFVSFSCEDSANNAIKEMDGKEL-NGRQIRVNLATERS 115
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +3
Query: 246 QRIAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
Q FG +T A V+ E GRS+GFGFV FS + A A+ EM+G+ + + + V LA
Sbjct: 53 QAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLAT 112
Query: 420 RK 425
+
Sbjct: 113 ER 114
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA 123
GFV+F D+A A E++GKEL G+ + V A +++
Sbjct: 79 GFVSFSCEDSANNAIKEMDGKEL-NGRQIRVNLATERS 115
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +3
Query: 255 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
A + ++ AKV+++ GR+KG+GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +3
Query: 255 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
A + ++ AKV+++ GR+KG+GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
+ ++ AKV+ + GRSKG+GFV F+ E +A+ EMNG T+P+ ++ A K++
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 306 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 410
+KG+G+V F + A +AV M G+++G + + ++
Sbjct: 271 TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRIS 305
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +3
Query: 264 GTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
G + A+++++ RSKGFGFV F+S +EA KA+ E NG+ + + ++V A+ K+
Sbjct: 58 GQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 120
GFV F D A++A +E NG++L G+ ++V A+ K
Sbjct: 78 GFVTFASADEAQKALMEFNGQQL-NGRTIFVDYAKAK 113
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
+ ++ SAKV+++ GRSKG+GFV F E ++A+TEMNG + + V +A K
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 389
Q + FG + S K+ + KG GFV F+ + A A+ +NG ++G
Sbjct: 339 QPFSQFGEVVSVKIPV----GKGCGFVQFADRKSAEDAIESLNGTVIG 382
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +3
Query: 255 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
A + ++ AKV+ + GRSKG+GFV F+ E +A+TEMNG+ ++P+ A K+
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
+ ++ AKV+++ GRSKG+GFV F E ++A+TEMNG ++ + V +A K
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPK 293
Score = 34.3 bits (75), Expect = 0.081
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 389
Q + FG + S K+ + KG GFV F++ + A +A+ +NG ++G
Sbjct: 345 QPFSDFGEVVSVKIPV----GKGCGFVQFANRQSAEEAIGNLNGTVIG 388
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 377
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 263
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/64 (26%), Positives = 35/64 (54%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
Q + FG I S K+ + KG GFV F + A +A+ ++NG ++G + + ++ +
Sbjct: 324 QPFSEFGEIVSVKIPV----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNP 379
Query: 426 EDRK 437
+++
Sbjct: 380 ANKQ 383
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 270 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 377
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNG 168
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 377
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 270 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 377
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 377
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +3
Query: 261 FGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
FG I S K+ + KG GFV F + A +A+ ++NG ++G + + ++ + +++
Sbjct: 327 FGEIVSVKIPV----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 381
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 270 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 377
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNG 166
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Frame = +3
Query: 255 APFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 380
A FG + AKV++ E GRS+GFGFV F+ AT A++EM+G+
Sbjct: 56 AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 120
GFV F D AA A E++GKEL G+ + V A +
Sbjct: 79 GFVNFNDEGAATAAISEMDGKEL-NGRHIRVNPANDR 114
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Frame = +3
Query: 255 APFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 380
A FG + AKV++ E GRS+GFGFV F+ AT A++EM+G+
Sbjct: 56 AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 120
GFV F D AA A E++GKEL G+ + V A +
Sbjct: 79 GFVNFNDEGAATAAISEMDGKEL-NGRHIRVNPANDR 114
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Frame = +3
Query: 276 SAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
SA+V+ D GRS G+GFV F++ EEA A+T++NG+ + +P+ + + R
Sbjct: 223 SARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLR 273
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 264 GTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
GT+ + +++ + DG+++GF FV +S EEA A+ + + V + + V+ A+R
Sbjct: 119 GTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 172
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKE 138
GFV+F + AE A +LNGKE++ G+P+ + + + A ++
Sbjct: 239 GFVSFATREEAENAITKLNGKEIM-GRPITLKFSLRSASESED 280
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 401
T Q + F + + A+VM + GRS+GFGFV F + ++A A+ EMNG+ + ++ +
Sbjct: 159 TLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +3
Query: 264 GTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ---RKEDR 434
G + S+K++ +D S +GFV + A A+ +NGR + +P+ V A ++ED
Sbjct: 83 GPVESSKLIRKDKSS--YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDT 140
Query: 435 KAH 443
+H
Sbjct: 141 SSH 143
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQ 132
GFV + D +A A + LNG+ L G+P+ V A +R+
Sbjct: 99 GFVHYFDRRSAALAILSLNGRHLF-GQPIKVNWAYATGQRE 138
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
FG I ++MLE GRS+GFGF+ F+ +++ EM+GR G + + V A+ K R
Sbjct: 30 FGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGR 89
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 264 GTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
G + A+V+ + GRSKGFGFV SS +E KA+ +NG + + + V+ A+ + R
Sbjct: 273 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 331
Score = 34.3 bits (75), Expect = 0.081
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 243 AQRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
AQ G + +V+ + GRS+GFGFV S+ E A + NG +PL V
Sbjct: 116 AQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 264 GTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
G + A+V+ + GRSKGFGFV SS +E KA+ +NG + + + V+ A+ + R
Sbjct: 281 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339
Score = 34.3 bits (75), Expect = 0.081
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 243 AQRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
AQ G + +V+ + GRS+GFGFV S+ E A + NG +PL V
Sbjct: 116 AQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 401
F + + A+VM + GRS+GFGFV F + ++A A+ EMNG+ V ++ +
Sbjct: 171 FNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 219
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 255 APFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ---RK 425
A G I S K++ +D S +GFV + A+ A+ +NGR + +P+ V A ++
Sbjct: 84 ASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQR 141
Query: 426 EDRKAH 443
ED +H
Sbjct: 142 EDTSSH 147
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
Q APF + + + R KGFGF+ F S ++A KA+ +NG+IV + ++V A+
Sbjct: 89 QLFAPFARLIKDQ---QTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKEV 145
Query: 426 E 428
E
Sbjct: 146 E 146
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK 144
GF+ FE D A++A LNGK +V G+ ++V A++ LK
Sbjct: 110 GFITFESEDDAQKALKALNGK-IVNGRLIFVETAKEVEAPTTSLK 153
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 413
FG + SAKV ++ G SK FGFV + S A A+ MNGR +G K L V L
Sbjct: 372 FGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 261 FGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG--RIVG-TKPLYVALAQRKE 428
+GTI +++ SKG F+ + + E+A A+ +NG ++ G T PL V A +
Sbjct: 129 YGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTER 188
Query: 429 DR 434
+R
Sbjct: 189 ER 190
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 FGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
+G IT ++M+ + GR +GFGF+ F+ A A+ M+GR +G K + V A+ K
Sbjct: 35 YGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 FGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
+G IT ++M+ + GR +GFGF+ F+ A A+ M+GR +G K + V A+ K
Sbjct: 35 YGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +3
Query: 255 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
A FG + AKV+ + G SKGFGFV +++ E++ K + M+G+ + ++ A+ +E
Sbjct: 77 AQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPRE 136
Query: 429 DRKAH 443
+++
Sbjct: 137 QSQSY 141
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Frame = +3
Query: 261 FGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 380
+G + +V+L E GRS+GFGFV F+S E A+ A+ ++GR
Sbjct: 63 YGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGR 104
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +3
Query: 246 QRIAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
Q + G + A+V+ E GRS+GFGFV S +E +A++ ++G+ + + + V +A+
Sbjct: 262 QLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
Query: 420 RKEDRKAH 443
+ R+ +
Sbjct: 322 ERPPRRGY 329
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 264 GTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 374
GT+ A+V+ E +S+GFGFV SS +EA AV + N
Sbjct: 174 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 212
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 270 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
+ AKV+ E GRS+GFGF+ F S E A+ MNG V + L + LA +E
Sbjct: 245 VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASERE 299
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 264 GTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
GT+ +++ + RS+GFGFV S EEA +A+ N +G + + V
Sbjct: 140 GTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 120
GF++FE + + A +NG E VEG+ L + A ++
Sbjct: 263 GFISFESAENVQSALATMNGVE-VEGRALRLNLASER 298
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 FGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V AQ +
Sbjct: 29 FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 120
GFV F+D A A E+NGKEL +G+ + V AQ +
Sbjct: 50 GFVTFKDEKAMRDAIEEMNGKEL-DGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 FGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V AQ +
Sbjct: 29 FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 120
GFV F+D A A E+NGKEL +G+ + V AQ +
Sbjct: 50 GFVTFKDEKAMRDAIEEMNGKEL-DGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 FGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V AQ +
Sbjct: 29 FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 120
GFV F+D A A E+NGKEL +G+ + V AQ +
Sbjct: 50 GFVTFKDEKAMRDAIEEMNGKEL-DGRVITVNEAQSR 85
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +3
Query: 264 GTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
G + A+V+ + GRS+G+GFVC+SS E A+ ++G + + + V LAQ K+
Sbjct: 201 GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 410
T AQ I F +V+ + G+S+GF FV S+ E+ + ++G + L V
Sbjct: 100 TLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVN 159
Query: 411 LAQRKEDRKAHL 446
A + + K L
Sbjct: 160 FADKPKPNKEPL 171
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = +3
Query: 279 AKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 401
A+VM + GRS+GFGFV F + ++A A+ EMNG+ V ++ +
Sbjct: 181 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 223
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 255 APFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ---RK 425
A G I S K++ +D S +GFV + A+ A+ +NGR + +P+ V A ++
Sbjct: 84 ASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQR 141
Query: 426 EDRKAH 443
ED +H
Sbjct: 142 EDTSSH 147
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = +3
Query: 258 PFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 377
PFG +T V ++ G S+GFGFV F S E+A +A+ ++NG
Sbjct: 235 PFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 243 AQRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 413
A PFG + SAKV ++ G SK FGF+ + S A A+ MNG + K L V L
Sbjct: 356 AATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 261 FGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKE 428
+GTI +++ + SKG F+ + S E+A A+ +NGR + PL V A ++
Sbjct: 132 YGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEK 191
Query: 429 DRKA 440
+R+A
Sbjct: 192 ERQA 195
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 13 FVAFEDPDAAERACIELNGKELVEGK--PLYVGRAQKKAERQ 132
F+ +E + A A LNG+ ++EG PL V A + ERQ
Sbjct: 153 FLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQ 194
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 150
GF++++ AA+ A +NG +L GK L V + ++Q++ + K
Sbjct: 383 GFISYDSQAAAQNAINTMNGCQL-SGKKLKVQLKRDNGQQQQQQQSK 428
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 243 AQRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 413
A PFG + SAKV ++ G SK FGF+ + S A A+ MNG + K L V L
Sbjct: 347 AATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 261 FGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKE 428
+GTI +++ + SKG F+ + S E+A A+ +NGR + PL V A ++
Sbjct: 123 YGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEK 182
Query: 429 DRKA 440
+R+A
Sbjct: 183 ERQA 186
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 13 FVAFEDPDAAERACIELNGKELVEGK--PLYVGRAQKKAERQ 132
F+ +E + A A LNG+ ++EG PL V A + ERQ
Sbjct: 144 FLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQ 185
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 150
GF++++ AA+ A +NG +L GK L V + ++Q++ + K
Sbjct: 374 GFISYDSQAAAQNAINTMNGCQL-SGKKLKVQLKRDNGQQQQQQQSK 419
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 258 PFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 377
PFG +T V ++ S+GFGFV F S E+A +A+ ++NG
Sbjct: 196 PFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
FG + + V+ +D G S+GF F+ F S + A +A+ M+GR++G K L V + ED
Sbjct: 40 FGKVIRS-VLAKDFRGESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQRTPKVED 97
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +3
Query: 264 GTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
G + A+V+ + GRSKGFGFV + S +E A+ ++G + + + V+ A+ + R+
Sbjct: 228 GKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287
Query: 438 AH 443
+
Sbjct: 288 QY 289
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 243 AQRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
AQ G + +V+ + GRS+GFGFV SS E A + NG + +PL V
Sbjct: 108 AQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/49 (36%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 401
+ T + A+VM + GRS+GFGFV F + ++A A+ E+ G+ +G++ +
Sbjct: 162 YPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQI 210
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +3
Query: 264 GTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ---RKEDR 434
G + S K++ ++ S +GFV + A A+ +NGR + +P+ V A ++ED
Sbjct: 78 GPVESCKLIRKEKSS--YGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDT 135
Query: 435 KAH 443
+H
Sbjct: 136 SSH 138
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQ 132
GFV + D +A A + LNG+ L G+P+ V A +R+
Sbjct: 94 GFVHYFDRRSAGLAILSLNGRHLF-GQPIKVNWAYASGQRE 133
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 297 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 440
DG+S+ FGF+ F S +EA +A+ N +GT + V +A + D A
Sbjct: 5 DGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENA 52
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
+G + AKV+L+ GRS+GFGF+ F + +A+ MNG + + + V AQ
Sbjct: 30 YGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQ 84
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 114
GF+ F++ A + A +NG +L +G+ + V +AQ
Sbjct: 51 GFITFDEKKAMDEAIAAMNGMDL-DGRTITVDKAQ 84
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 386
T Q + +G + V+++ R KGF +V FSS EEA KA+ E+N ++V
Sbjct: 36 TLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLV 87
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGR 380
F +T A+VM GRS+G+GFV F S + A A++ MNG+
Sbjct: 54 FNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
FG + K++++ RSKG+ F+ +++ E A A+ EMNG+I+ + V +A+ K R
Sbjct: 305 FGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTKPFR 364
Query: 435 K 437
+
Sbjct: 365 Q 365
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
+DG KG+G + F+SPEEA KA+ EMNG+++ + + + LA +
Sbjct: 419 DDGSFKGYGHIEFASPEEAQKAL-EMNGKLLLGRDVRLDLANER 461
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
FG I S ++ D G S+GFGF+ + S E + A+ M G+ + + + V+ A +K+
Sbjct: 135 FGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDT 194
Query: 432 R 434
+
Sbjct: 195 K 195
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Frame = +3
Query: 261 FGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV-----TEMNGRIVGTKP 398
FG I A V+L E G S+GFGFV + S E A A+ E++GRI+G P
Sbjct: 59 FGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHP 111
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 261 FGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNG 377
FG + +K++ E GRS+GFGFV F + A+ EMNG
Sbjct: 29 FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRI 383
FG +T+ K++ + +S G+G+V F+S E+A AV MNG++
Sbjct: 81 FGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
FG +T+ K++ + +S G+G+V F+S E+A AV MNG+ + + V Q
Sbjct: 100 FGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQ 154
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Frame = +3
Query: 246 QRIAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 380
+ + +G + AK+++ E GRS+GF FV F+S EEA+ A+ +++G+
Sbjct: 52 EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQ 97
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMN----GRIVGTKPLYV 407
FG I AKV+ + RSKGFGFV F E AT+A N GR V K Y+
Sbjct: 32 FGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLAYL 86
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 APFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
A +G + +K++ E GRS+GFGFV F + A+ MNG+ + + + V AQ +
Sbjct: 29 AQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 120
GFV F+D A + A +NG++L +G+ + V AQ +
Sbjct: 52 GFVTFKDEKAMKDAIEGMNGQDL-DGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 APFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
A +G + +K++ E GRS+GFGFV F + A+ MNG+ + + + V AQ +
Sbjct: 29 AQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 120
GFV F+D A + A +NG++L +G+ + V AQ +
Sbjct: 52 GFVTFKDEKAMKDAIEGMNGQDL-DGRSITVNEAQSR 87
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 40 FGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRK 86
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
+ + FG I K++ ++ RSKG+ F+ F+S ++A A+ M+ R+ + +Y+ +A+
Sbjct: 58 REFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAK 117
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 413
+G + A VM + RS+GFGFV +SS EA AV+ M+G+ + + + V L
Sbjct: 26 YGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
FG I A V+ + GRSKG+GFV F E A +A MN I G +
Sbjct: 45 FGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRR 91
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 368
FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 30 FGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIE 60
GFV F DP+AA++AC++
Sbjct: 51 GFVTFCDPEAAQKACVD 67
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 368
FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 30 FGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIE 60
GFV F DP+AA++AC++
Sbjct: 51 GFVTFCDPEAAQKACVD 67
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 261 FGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 380
FG + +K+++ E GRSKGF FV F + A+ MNG+
Sbjct: 67 FGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQ 108
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
FG + ++++ R KGF F+ + + EEA KA+ M+G+ + + ++V A+ + D
Sbjct: 100 FGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSD 158
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +3
Query: 264 GTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
G + A+V+ E GRS+GFGFV S+ E A+ ++G+ + + + V +A+ + R
Sbjct: 231 GKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 35.1 bits (77), Expect = 0.047
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 264 GTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
GT+ ++V+ + +S+GFGFV S+ EEA KAV + N V + L V A + R
Sbjct: 137 GTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSR 195
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +3
Query: 300 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
G +GFGFV + E+A +A+ MN +++G + + + A+ E+RK
Sbjct: 85 GEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAE--ENRK 128
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3
Query: 252 IAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
++ FG + VM + GRS+GFG+V F+S E+A A+ +G + L V +A K
Sbjct: 23 MSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--KGEHFLGNRILEVKVATPK 80
Query: 426 EDRK 437
E+ +
Sbjct: 81 EEMR 84
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 264 GTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 386
G + SAKV G SK GFGFV FSS E+ A+ +N ++
Sbjct: 201 GKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Score = 34.7 bits (76), Expect = 0.062
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 264 GTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
G + +VM + GRS+ FGF S E+A V ++NG V + + V + ++
Sbjct: 100 GAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEK 154
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 416
FG + ++ + GRS+GFGFV F+ +A A M+G+ + +PL ++ A
Sbjct: 64 FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
E G KGF FV F+ ++A A+ + NG + G +P+ V A K
Sbjct: 367 ETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPK 410
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
T Q +G I A V+ + GRSKG+GFV F PE A +A + I G +
Sbjct: 39 TLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRR 93
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIE 60
GFV F DP+AA RAC +
Sbjct: 68 GFVTFRDPEAARRACAD 84
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 264 GTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
G + S ++M+ +G+ G+GFV F+S +E KA+ NG + +++ +A+
Sbjct: 268 GEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNGEYLHDHKIFIDVAK 320
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 300 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
G+ G GFV F+S EA +A+ + NG + +++ +A +K
Sbjct: 164 GKLVGCGFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKK 205
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 300 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
G G GFV F+S EA KA+ +MNG + ++ +++ + +
Sbjct: 526 GEHVGCGFVEFASVNEAQKALQKMNGENLRSREIFLDVVE 565
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 416
FG I AKV+ + G SKG+GFV ++ + A AV MNG + L V +A
Sbjct: 503 FGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 416
FG I AKV+ + G SKG+GFV ++ + A AV MNG + L V +A
Sbjct: 503 FGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Frame = +3
Query: 261 FGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 395
FG + A V+L+D GR++GFGFV F+ P A +TE ++GR+V K
Sbjct: 29 FGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 395
FGT T VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 131 FGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Frame = +3
Query: 261 FGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 395
FG + A V+L+D GR++GFGFV F+ P A +TE ++GR+V K
Sbjct: 29 FGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 395
FGT T VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 131 FGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.9 bits (79), Expect = 0.027
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
+DG +GFG V F+S EEA KA+ E +GR + + + + +AQ + +R
Sbjct: 333 DDGSFRGFGHVEFASSEEAQKAL-EFHGRPLLGREIRLDIAQERGER 378
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 35.5 bits (78), Expect = 0.035
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 539 SLPPAPRYYGPAQMT--QIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 694
++PP P P Q T Q +PT P+ PP+ PSTQ S +QPT P+
Sbjct: 52 TMPPVPSLPTPGQQTLPQPQPTLPQPTGLPPM-PSTQIPSLPNQVQPTIPNIPQ 104
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 35.5 bits (78), Expect = 0.035
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +2
Query: 509 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 688
P S F P PPAP + AQ W QP RP Q++ Y PTY PA
Sbjct: 208 PPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY----PTYSPA 259
Query: 689 P 691
P
Sbjct: 260 P 260
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 35.5 bits (78), Expect = 0.035
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +2
Query: 509 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 688
P S F P PPAP + AQ W QP RP Q++ Y PTY PA
Sbjct: 266 PPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY----PTYSPA 317
Query: 689 P 691
P
Sbjct: 318 P 318
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 300 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
G S+GF FV + +EA KAV ++GR+V + + V A+
Sbjct: 54 GDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 300 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
G S+GF FV + +EA KAV ++GR+V + + V A+
Sbjct: 54 GDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 35.1 bits (77), Expect = 0.047
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAHLHK 715
PP P Y P + ++P TP ++ PP++P + PTY P P P +HK
Sbjct: 511 PPTPTYSPPIKPPPVKPPTPTYS--PPIKP----PPVHKPPTPTYSP-PIKPPPIHK 560
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAHLHK 715
PP P Y P ++ ++P TP ++ PPV+P + P Y P P P +HK
Sbjct: 411 PPTPTYSPPIKLPPVKPPTPIYS--PPVKP----PPVHKPPTPIYSP-PVKPPPVHK 460
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 691
PP P Y P + ++P TP ++ PPV+P P +P P
Sbjct: 461 PPTPTYSPPIKPPPVKPPTPTYS--PPVQPPPVQKPPTPTYSPPVKPPP 507
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 536 PSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 700
P PP P Y P Q + +P TP ++ PPV+P P +P P P
Sbjct: 474 PVKPPTPTYSPPVQPPPVQKPPTPTYS--PPVKPPPIQKPPTPTYSPPIKPPPVKP 527
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAHLHK 715
PP P Y P + ++P TP ++ PPV+P + P Y P P P +HK
Sbjct: 327 PPTPTYSPPIKPPPVKPPTPIYS--PPVKP----PPVHKPPTPIYSP-PVKPPPVHK 376
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAH 706
PP P Y P + ++ P TP ++ PP++P + PTY P + P H
Sbjct: 141 PPTPSYSPPVKPPPVQMPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPPVH 189
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 536 PSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAHLH 712
P PP P Y P + + +P TP ++ PP++P + PTY P P P +H
Sbjct: 524 PVKPPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----IHKPPTPTYSP-PIKPPPVH 576
Query: 713 K 715
K
Sbjct: 577 K 577
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 542 LPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 691
LPP P Y P + ++ P TP ++ PPV+P P +P P
Sbjct: 679 LPPTPTYSPPVKPPPVQVPPTPTYS--PPVKPPPVQVPPTPTYSPPIKPPP 727
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAHLHK 715
PP P Y P + I +P TP ++ PP++P + PTY P P P +HK
Sbjct: 544 PPTPTYSPPIKPPPIHKPPTPTYS--PPIKPPP----VHKPPTPTYSP-PIKPPPVHK 594
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAHLHK 715
PP P Y P + + +P TP ++ PP++P + PTY P P P +HK
Sbjct: 561 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSP-PIKPPPVHK 611
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAHLHK 715
PP P Y P + + +P TP ++ PP++P + PTY P P P +HK
Sbjct: 578 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSP-PIKPPPVHK 628
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAHLHK 715
PP P Y P + + +P TP ++ PP++P + PTY P P P +HK
Sbjct: 595 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSP-PIKPPPVHK 645
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAHLHK 715
PP P Y P + +P TP ++ PP++P + P Y P P P +HK
Sbjct: 175 PPTPTYSPPIKPPVHKPPTPIYS--PPIKP----PPVHKPPTPIYSP-PIKPPPVHK 224
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAHLHK 715
PP P Y P + + +P TP ++ PP++P + PTY P P P +HK
Sbjct: 191 PPTPIYSPPIKPPPVHKPPTPIYS--PPIKPPP----VHKPPTPTYSP-PVKPPPVHK 241
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 700
PP P Y P + ++ P TP ++ PPV+P + PTY P ++P
Sbjct: 259 PPTPIYSPPVKPPPVQTPPTPIYS--PPVKPPP----VHKPPTPTYSPPVKSP 305
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 700
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 612 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 658
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 700
PP P Y P + ++ P TP ++ PPV+P PTY P + P
Sbjct: 663 PPTPTYSPPVKPPPVQLPPTPTYS--PPVKPPPVQVPP----TPTYSPPVKPP 709
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 700
PP P Y P + + +P TP ++ PPV+P PTY P + P
Sbjct: 646 PPTPTYSPPIKPPPVQKPPTPTYS--PPVKPPPVQLPP----TPTYSPPVKPP 692
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 34.7 bits (76), Expect = 0.062
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
+G I A V+ + GRSKG+GFV F PE A +A + I G +
Sbjct: 47 YGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRR 93
Score = 31.5 bits (68), Expect = 0.57
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIE 60
GFV F DP+AA RAC++
Sbjct: 68 GFVTFRDPEAARRACVD 84
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 34.3 bits (75), Expect = 0.081
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 261 FGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
+G++ + K++ + R K +GFV FS+ A A+ +M+G+ +G + + V
Sbjct: 30 YGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRV 79
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 34.3 bits (75), Expect = 0.081
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
+G ++ A VM + GR +GFGFV FS P + + E + + T+ + V A +E++
Sbjct: 29 YGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHS--IDTREVDVKRAMSREEQ 86
Query: 435 K 437
+
Sbjct: 87 Q 87
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
+G +T +M + R +GFGFV F S E+A +V + K + V A K+
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
>At2g15500.1 68415.m01774 hypothetical protein
Length = 132
Score = 34.3 bits (75), Expect = 0.081
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 82 EGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 198
+ K V RAQKK+ER+ ELK +EQ E ++Q N
Sbjct: 39 DDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 395
FGTI VM + R +GFGF+ F S E K E+NG++V K
Sbjct: 145 FGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 395
+G + A +M + GR++GFGF+ F+ P A + + + ++GR V K
Sbjct: 38 YGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAK 87
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKR 147
GF+ F DP AER ++ K +++G+ + +A + + Q+ LKR
Sbjct: 59 GFIVFADPSVAERVIMD---KHIIDGRTVEAKKAVPR-DDQQVLKR 100
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 258 PFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
PFGT+ S +V + G S+G G+V S A A+ ++G VG + + V
Sbjct: 130 PFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRV 181
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 377
FGTI S +V+ + GR++ F F+ F+S EE A++ NG
Sbjct: 235 FGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNG 274
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = +3
Query: 255 APFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 395
A FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 54 AQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 106
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT---EMNGRIVGTK 395
FG + A +M + GR++GFGFV F+ P A + V ++G+IV K
Sbjct: 29 FGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = +3
Query: 255 APFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 395
A FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT---EMNGRIVGTK 395
FG + A +M + GR++GFGFV F+ P A + V ++G+IV K
Sbjct: 29 FGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = +3
Query: 255 APFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 395
A FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 536 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAH 706
P PP P P+ +TQI+P TP N P S+ S+ A P+ P P P +
Sbjct: 14 PETPPQPSDSKPSTLTQIQP-TPSTNPSPSSVVSS-IPSSPAPQSPSLNPNPNPPQY 68
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
T + FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 28 TMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
T + FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 28 TMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
T + FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 28 TMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 264 GTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
G +T G + FGFV ++ A KAV + V +PL V LA+ + +RK
Sbjct: 316 GEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
+ G SKG+ FV F + + A KA+ E++ + K + +L++ K
Sbjct: 152 DSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETK 195
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 300 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
G +GFGF+ F P +A +A +M+G ++ + L V A+ E+RK
Sbjct: 75 GDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAE--ENRK 118
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 676
PN+ P+ + S PPAP P P P PP++PS A S AN
Sbjct: 140 PNVGPTNPESPPLQS-PPAPPASDPTNSPPASPLDP--TNPPPIQPSGPATSPPANPNAP 196
Query: 677 YRPAPRAP 700
P P P
Sbjct: 197 PSPFPTVP 204
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 258 PFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNG 377
PFG I K L+ K FGFV F E+A+ A+ M+G
Sbjct: 35 PFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDG 76
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 395
FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 133 FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 395
+G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 29 YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 395
FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 133 FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 395
+G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 29 YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 395
FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 133 FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 395
+G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 29 YGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 427
Score = 32.7 bits (71), Expect = 0.25
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 604 WSCRSYLSHLSWSIVTWCW 548
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 492
Score = 32.7 bits (71), Expect = 0.25
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 604 WSCRSYLSHLSWSIVTWCW 548
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 32.3 bits (70), Expect = 0.33
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 261 FGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKE 428
FG + +M ++ R S+G GFV +SS E A A+ +NG +PL V A+ K
Sbjct: 234 FGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
Query: 429 DR 434
+
Sbjct: 294 PK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 32.3 bits (70), Expect = 0.33
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 261 FGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKE 428
FG + +M ++ R S+G GFV +SS E A A+ +NG +PL V A+ K
Sbjct: 234 FGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
Query: 429 DR 434
+
Sbjct: 294 PK 295
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 676
PN P+G PS PP P++ A Q +T R+N Q P + + S + + P
Sbjct: 381 PNQQPTGRFDPQFPSQPPRPQFPNQAPNQQ---STGRFNPQFPNQRPSPPQSRFPDQAPN 437
Query: 677 YRPAPRAP 700
+P+ +P
Sbjct: 438 QQPSGPSP 445
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLP-PAPRYYGPAQMTQ----IRPTTPRWNAQPPVRPSTQAASAYA 661
PN PSG S P P PR+ A Q P P PP RP T+ + +
Sbjct: 436 PNQQPSGPSPNRHPDRQGPPPRFQNQAPNQQPTGRFEPQPPNPPRAPP-RPQTRLPNETS 494
Query: 662 NMQPTYRPAPRAPA 703
N QPT PA
Sbjct: 495 NEQPTAPGRSSGPA 508
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 261 FGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 374
FGT+ +V + G+SK FGF+ F PE A A MN
Sbjct: 83 FGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMN 122
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 1 RHEGFVAFEDPDAAERACIELNGKELVE 84
+H GF+ FEDP+ AE A +N L+E
Sbjct: 101 KHFGFIQFEDPEVAEIAAGAMNDYLLME 128
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 31.9 bits (69), Expect = 0.43
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPP-APRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 673
P+I PS S P PP +P P PTTP PP P+T P
Sbjct: 452 PSIVPSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSP 511
Query: 674 TYRPAP 691
T P+P
Sbjct: 512 T-TPSP 516
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 497 PNIPPSGAS-GFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 673
P+ PP+ S G P + P+P + GP+ + P+ P PPV PS + P
Sbjct: 564 PSTPPTPISPGQNSPPIIPSPPFTGPSPPSS--PSPP----LPPVIPSPPIVGPTPSSPP 617
Query: 674 TYRPAPRAPAHLH 712
P P H H
Sbjct: 618 PSTPTPGTLLHPH 630
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/68 (25%), Positives = 24/68 (35%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 676
P+ P + G PS P P G I P+ P PP P++ + +
Sbjct: 495 PSSPTTPTPGGSPPSSPTTPSPGGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPSSPTP 554
Query: 677 YRPAPRAP 700
P P P
Sbjct: 555 SSPIPSPP 562
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 386
+G I V+++ G++KGFGFV F + + A +A+ E RI+
Sbjct: 127 YGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL 170
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 386
+G I V+++ G++KGFGFV F + + A +A+ E RI+
Sbjct: 127 YGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL 170
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 31.9 bits (69), Expect = 0.43
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 300 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
G +GFGFV F P +A A M+G ++ + L V A+ E+RK
Sbjct: 74 GDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAE--ENRK 117
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 321 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 446
FV FS PEE TKA+ +++GR G + + ++ K L
Sbjct: 336 FVQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNEL 377
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 288 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
++++GR +G F+ F S E A +A+ +NG + KP+ +
Sbjct: 390 LMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMII 429
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 383
+G IT V+++ GR+KGFGFV F + + A A+ R+
Sbjct: 186 YGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRM 228
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
+G I ++M + GRS+GFGFV F + + + ++ +G K + + A+ K
Sbjct: 180 YGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 368
T A FG + + +M + G +GFGFV F+ A K + E
Sbjct: 81 TFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK--KAERQKELKRKFEQLKSE 171
GFV+F+ AE A IE GK+ + G+P+ + ++++ K + ++ L+ E+ + E
Sbjct: 234 GFVSFKTKKQAEAALIEFQGKDFL-GRPIRLAKSKQFVKLQAKEGLQPPEEEAEEE 288
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 395
+G IT + +M + G+ +GFGF+ F+ P K + + +NG+ V K
Sbjct: 42 YGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIK 91
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 255 APFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 374
A +G + +V+ E RS+GFGFV F S E + +++ N
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 395
+G IT + +M + G+ +GFGF+ F+ P K + + +NG+ V K
Sbjct: 42 YGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIK 91
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 255 APFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 374
A +G + +V+ E RS+GFGFV F S E + +++ N
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 31.1 bits (67), Expect = 0.76
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 700
PP+PR P ++ RPTTP+ P P + + A + YRP P P
Sbjct: 275 PPSPRS-DPPRLDAPRPTTPK-----PPSPRSVSPRAVQRREIVYRPEPTLP 320
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Frame = +2
Query: 509 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPST-QAASAYAN 664
P GAS + S PP+PR P T RP +PR A PP RP+T + S A+
Sbjct: 203 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTTPRPPSPLAD 261
Query: 665 MQPTYRPAPRAP 700
P P P
Sbjct: 262 APRLDAPRPTTP 273
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 31.1 bits (67), Expect = 0.76
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 700
PP+PR P ++ RPTTP+ P P + + A + YRP P P
Sbjct: 274 PPSPRS-DPPRLDAPRPTTPK-----PPSPRSVSPRAVQRREIVYRPEPTLP 319
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Frame = +2
Query: 509 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPST-QAASAYAN 664
P GAS + S PP+PR P T RP +PR A PP RP+T + S A+
Sbjct: 202 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTTPRPPSPLAD 260
Query: 665 MQPTYRPAPRAP 700
P P P
Sbjct: 261 APRLDAPRPTTP 272
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSP 341
FG + VM E GR +GFGFV FS P
Sbjct: 29 FGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 395
+G ++ A +M++ R +GFGFV F S + K ++NG+ V K
Sbjct: 133 YGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVK 183
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 31.1 bits (67), Expect = 0.76
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA-----VTEMNGRIVGTKPLYVALA- 416
FG + +K++ + G+S+ FGFV F + T A V E + V + V +A
Sbjct: 30 FGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMDVEESRSKCVNVGSITVEVAR 89
Query: 417 QRKEDRKA 440
QR+++R A
Sbjct: 90 QRRKNRSA 97
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.1 bits (67), Expect = 0.76
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
Q + +G + A V E G+ +GFGFV F++ + KA+ + + I+G KP+ V A
Sbjct: 24 QYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTH-FILG-KPVDVRKAI 81
Query: 420 RKED 431
RK +
Sbjct: 82 RKHE 85
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 261 FGTITSAKVMLEDG---RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
FG T VM DG R +GFGFV + S E++ + V + N + K + V A KE
Sbjct: 143 FGRTTDVVVM-HDGVTNRPRGFGFVTYDS-EDSVEVVMQSNFHELSDKRVEVKRAIPKE 199
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 539 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 673
S PP P + P T RP P + P P QAA+ Y P
Sbjct: 151 SPPPPPVLFSPPPPTVTRPPPPPTITRSPPPPRPQAAAYYKKTPP 195
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 264 GTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 416
G I K+ + DG+S+ F ++ F + +EA A+T +N + T + V +A
Sbjct: 27 GEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFIDTYRISVEVA 78
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 389
+G + A V+L+ G+SKG+GFV F + A A+ E + +I G
Sbjct: 98 YGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 389
+G + A V+L+ G+SKG+GFV F + A A+ E + +I G
Sbjct: 98 YGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 554 PRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAH 706
P+ P +++ RP P+ QPP T ++P P P PAH
Sbjct: 56 PQMLPPELLSRARPQFPQSPQQPPQPIQTLPPPIQQQLKPLNLPRPPVPAH 106
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/77 (31%), Positives = 30/77 (38%)
Frame = +2
Query: 476 YAHAANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASA 655
Y P PP S PP P YY P +TQ P +P + PPV S
Sbjct: 654 YTPVIQSPPPPPVYYSPVTQSPPPPPPVYYPP--VTQSPPPSPVY--YPPVTQSPPPPPV 709
Query: 656 YANMQPTYRPAPRAPAH 706
Y + T P P +P +
Sbjct: 710 Y-YLPVTQSPPPPSPVY 725
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 673
PP+P YY P + P+TP PP P+ Y + P
Sbjct: 735 PPSPVYYPPVTQSPPPPSTP-VEYHPPASPNQSPPPEYQSPPP 776
>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 371
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 547 SSTTLLWTSSNDSNKTYNSKVECTAPCKA*HTSSICICKYATHLQTSTESS 699
SS++ L +S+D N T ++ C P S++ CK+ HLQ E S
Sbjct: 27 SSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWS 77
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 264 GTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
G + S ++++ + + G+GFV F+SP A A+ + NG + +++ +A+
Sbjct: 706 GEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAK 758
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 416
+G I K +++ G+SKG+GF+ F S A A+ + +I GT+ LA
Sbjct: 151 YGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKI-GTRMTACQLA 203
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 285 VMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 377
V+ +G+ G+GFV F+S A KA+ E NG
Sbjct: 190 VVNHEGKHVGYGFVEFASAYGANKALEEKNG 220
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 264 GTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 383
G I +++++ G G GFV F+S EA KA+ + G+I
Sbjct: 400 GEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +2
Query: 491 NGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPST-QAASAYANM 667
N P+ PPS SG V LPP P P T +P PP P + ++++
Sbjct: 466 NLPSDPPS--SGDHVTLLPPPPPPPPPPLFTSTTSFSPSQPPPPPPPPPLFMSTTSFSPS 523
Query: 668 QPTYRPAP 691
QP P P
Sbjct: 524 QPPPPPPP 531
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAH 706
PP+P YY P +TQ P P PPV S S TY P P +P +
Sbjct: 554 PPSPVYYPP--VTQ-SPPPPSPVYYPPVTNSPPPPSPVYYPPVTYSPPPPSPVY 604
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 261 FGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 383
FG + ++ L E G+ KGFGF+ F E + A +NG++
Sbjct: 288 FGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKL 330
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 536 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQ-PTYRPAPRAP 700
P PP P P + ++P TP+ P V+P + + + + PT +P P+ P
Sbjct: 43 PVKPPKPPAVKPPKPPAVKPPTPK---PPTVKPHPKPPTVKPHPKPPTVKPHPKPP 95
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 261 FGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 383
FG++ +V ++ G KGFGFV F+ E+A A+ +NG++
Sbjct: 308 FGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLNGQL 348
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +2
Query: 521 SGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 691
+ +F S PP ++Y P + + P + + PPV S + + P Y+ P
Sbjct: 23 ANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPP 79
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 539 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 691
S PP ++Y P + + P + + PPV S Y + P Y+ P
Sbjct: 45 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPP 95
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +2
Query: 539 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAH 706
S PP ++Y P + + P + + PPV S + + P Y+ P H
Sbjct: 101 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKH 156
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +2
Query: 521 SGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 691
+ +F S PP ++Y P + + P + + PPV S + + P Y+ P
Sbjct: 23 ANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPP 79
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 539 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 691
S PP ++Y P + + P + + PPV S Y + P Y+ P
Sbjct: 45 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPP 95
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +2
Query: 539 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAH 706
S PP ++Y P + + P + + PPV S + + P Y+ P H
Sbjct: 101 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKH 156
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQI----RPTTPRWNAQPPVRPSTQA--ASAY 658
P PP V +PP P PA T I P P PP P+ Q+ SA
Sbjct: 691 PPPPPPPMQHSTVTKVPPPPPPAPPAPPTPIVHTSSPPPPPPPPPPPAPPTPQSNGISAM 750
Query: 659 ANMQPTYRPAPRAPAH 706
+ P PR P H
Sbjct: 751 KSSPPAPPAPPRLPTH 766
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = +2
Query: 536 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 691
P PP P Y P P P ++ PP P Y+ P+ P P
Sbjct: 440 PPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPP 491
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 676
P PP S P PP P Y P P P + PP P Y+ P
Sbjct: 442 PPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPP 501
Query: 677 YRPAP 691
P P
Sbjct: 502 PPPPP 506
>At2g38250.1 68415.m04697 DNA-binding protein-related contains
similarity to DNA-binding protein GI:170271 from
[Nicotiana tabacum]
Length = 289
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 106 RAQKKAERQKELKRKFEQLKSERL 177
R +++AE+++E +RK E+L+ ERL
Sbjct: 225 REKERAEKEEEWRRKMEELEKERL 248
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 416
E G SKG+ F + P A +NG +G K L V A
Sbjct: 411 ETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRA 451
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 13 FVAFEDPDAAERACIELNGKELVEGKPLYVGRA-----QKKAERQKELKRKFEQLKSERL 177
F ++DP + AC LNG ++ + K L V RA Q K E+++ L +Q+ +RL
Sbjct: 420 FCVYQDPSVTDIACAALNGIKMGD-KTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRL 478
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = +2
Query: 506 PPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 685
PPS PS P P Y P T P T N QPP+ T + + + T P
Sbjct: 611 PPSPVYSPPPPSHSPPPPVYSPPPPTFSPPPTHNTN-QPPMGAPTPTQAPTPSSETTQVP 669
Query: 686 AP 691
P
Sbjct: 670 TP 671
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = +2
Query: 506 PPSGASGFFVPSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYR 682
PP VP PP P P+ + I P P + PPV S Y+ P
Sbjct: 524 PPPKVEDTRVP--PPQPPMPSPSPPSPIYSPPPPVHSPPPPVYSSPPPPHVYSPPPPVAS 581
Query: 683 PAPRAP 700
P P +P
Sbjct: 582 PPPPSP 587
>At1g31250.1 68414.m03825 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
similar to prolin rich protein GB:S44189 GI:433706 from
[Zea mays]
Length = 165
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRP-TTPRWNAQPP-VRPSTQAASAYANMQ 670
P++ P+G + PS+ P Y P+ P +P PP PS + N
Sbjct: 81 PSVRPAGTTPNASPSVKLTPPYASPSMRPAGTPNASPSVKLTPPYASPSVRPTGTTPNAS 140
Query: 671 PTYRPAPRAPA 703
P+ P +P+
Sbjct: 141 PSLTPPNPSPS 151
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 264 GTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
G +T ++L+ S+GFGF+ S +A + + ++ ++ + + V A+R+ R
Sbjct: 99 GKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 488 ANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 646
A+ + P GA + + PP P Y P + TQ P P ++ QP PS A
Sbjct: 31 ASQQSYPQYGAESY---NYPPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 488 ANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 646
A+ + P GA + + PP P Y P + TQ P P ++ QP PS A
Sbjct: 31 ASQQSYPQYGAESY---NYPPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 488 ANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 646
A+ + P GA + + PP P Y P + TQ P P ++ QP PS A
Sbjct: 31 ASQQSYPQYGAESY---NYPPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 488 ANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 646
A+ + P GA + + PP P Y P + TQ P P ++ QP PS A
Sbjct: 31 ASQQSYPQYGAESY---NYPPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 303 RSKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 434
+S+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 53
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 410
T + +G I K + + G+SKG+GF+ + S A A+ + +I G++
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQ 213
Query: 411 LAQR 422
LA +
Sbjct: 214 LASK 217
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 410
T + +G I K + + G+SKG+GF+ + S A A+ + +I G++
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQ 213
Query: 411 LAQR 422
LA +
Sbjct: 214 LASK 217
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 410
T + +G I K + + G+SKG+GF+ + S A A+ + +I G++
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQ 213
Query: 411 LAQR 422
LA +
Sbjct: 214 LASK 217
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 362
FG + A V+ E GRSKG+GF+ F +A+
Sbjct: 35 FGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +2
Query: 530 FVPSLPPAPRYYGPAQMTQIRPTTPRW---NAQPPVRPSTQAASAYANMQPTY-RPAPRA 697
+V S PP P YY P+ + + P + + PP S Y + P Y +P
Sbjct: 789 YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPTYYSPSPKVEYKSPPPPYVYNSPPP 848
Query: 698 PAH 706
PA+
Sbjct: 849 PAY 851
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 530 FVPSLPPAPRYYGPAQMTQIRPTTPR--WNAQPPVRPSTQAASAYANMQPTY 679
+V S PP P YY P+ + + P +++ PP S Y + P Y
Sbjct: 738 YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPPPY 789
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +2
Query: 530 FVPSLPPAPRYYGPAQMTQIRPTTPRW---NAQPPVRPSTQAASAYANMQPTY-RPAPRA 697
+V S PP P YY P+ + + P + + PP S Y + P Y +P
Sbjct: 815 YVYSSPPPPTYYSPSPKVEYKSPPPPYVYNSPPPPAYYSPSPKIEYKSPPPPYVYSSPPP 874
Query: 698 PAH 706
P++
Sbjct: 875 PSY 877
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 569 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAH 706
PA RP PR +A P P A +YA + ++ P P P +
Sbjct: 334 PANFYTSRPHAPRSHAPPTYAPRPHAPRSYAPIN-SHLPRPNIPPY 378
>At4g12440.2 68417.m01969 adenine phosphoribosyltransferase,
putative strong similarity to SP|P31166 Adenine
phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT)
{Arabidopsis thaliana}; contains Pfam profile PF00156:
Phosphoribosyl transferase domain
Length = 182
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +1
Query: 34 DAAERACI----ELNGKELVEGKPLYV 102
+ E AC+ EL G+E +EGKPLYV
Sbjct: 151 EVIECACVIELPELKGRERLEGKPLYV 177
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 261 FGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG--RIVG-TKPLYVALAQRKE 428
+GTI +++ SKG F+ + + E+A A+ +NG ++ G T PL V A +
Sbjct: 129 YGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTER 188
Query: 429 DR 434
+R
Sbjct: 189 ER 190
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
+G I A ++ + RSKG+GFV F + AT+A + I G +
Sbjct: 40 YGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 300 GRSKGFGFVCFSSPEEATKAVTEMNGRIV 386
G+SKGF F+ + AV +NG +V
Sbjct: 74 GKSKGFAFLAYEDQRSTILAVDNLNGALV 102
>At3g21770.1 68416.m02746 peroxidase 30 (PER30) (P30) (PRXR9)
identical to SP|Q9LSY7 Peroxidase 30 precursor (EC
1.11.1.7) (Atperox P30) (PRXR9) (ATP7a) {Arabidopsis
thaliana}
Length = 329
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 179 LVIKVLICMLRTWMIQLMMNVCAKNC 256
+V+ VLI MLR+ QL MN AK+C
Sbjct: 13 VVVTVLIGMLRSSEAQLQMNFYAKSC 38
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 321 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
FV F +A KA+ MNG+++ KP+ + ++
Sbjct: 223 FVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +2
Query: 503 IPPSGASGFFVPS-----LPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANM 667
+PPS + +PS +PP PR+ P+ RP+TP +++ P P
Sbjct: 173 VPPSHSPPRHLPSPPASEIPPPPRHL-PSPPASERPSTPPSDSEHPSPPPPGHPKRREQP 231
Query: 668 QP--TYRPAPRAPA 703
P + RP P P+
Sbjct: 232 PPPGSKRPTPSPPS 245
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 70 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 198
K+ ++ Y QK+ + K+K E + ER+T+ QG N
Sbjct: 508 KQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERITKLQGEN 550
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 700
PP P P PTTP + PPV+P T PT P + P
Sbjct: 126 PPTPTVKPPTTSPVKPPTTPPVQS-PPVQPPTYKPPTSPVKPPTTTPPVKPP 176
>At5g07820.1 68418.m00896 expressed protein
Length = 561
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 533 VPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 694
+PSLPP + IR TT R P + + +A+ N +P + P+
Sbjct: 354 LPSLPPPSEVVTGSDPRPIRQTTSRSKTSLPEKKQSGSANLVTNPKPESKIRPK 407
>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 689
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Frame = +2
Query: 479 AHAANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIR-PTTPR-WNAQPPVRPSTQAAS 652
+H P P ++ PP P YY P+ + P P +N+ PP S
Sbjct: 66 SHEHKSPKYAPHPKPYVYIS--PPPPSYYSPSPKVNYKSPPPPNVYNSPPPPYYSPSPKV 123
Query: 653 AYANMQPTY 679
Y + P Y
Sbjct: 124 DYKSPPPPY 132
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV----TEMNGRIVGTK 395
++ P + K E ++ GFGF+ +++ + A KAV E +GRI+ K
Sbjct: 186 RQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 306 SKGFGFVCFSSPEEATKAVTEMN 374
S+GF FV F S E+ATKA+ N
Sbjct: 498 SRGFAFVHFYSVEDATKALEATN 520
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/67 (26%), Positives = 25/67 (37%)
Frame = +2
Query: 491 NGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQ 670
+ PN P +S F S P + G + T TTP + A PS + +
Sbjct: 1098 SSPNSGPVFSSSFTTSSTPTTFSFGGSSAATVSSTTTPIFGASTNNTPSPSPIFGFGSTP 1157
Query: 671 PTYRPAP 691
PT P
Sbjct: 1158 PTTPQQP 1164
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 383
+G I V+++ GR KG+GFV F + + A +A+ R+
Sbjct: 431 YGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRM 473
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAHLH 712
PP P P + P P + PPV P + Y +Y P P P H +
Sbjct: 6 PPYPPLPQPPSQNSLAPPPPPPSLPPPVPPPPPSHQPY-----SYPPPPPPPPHAY 56
>At1g54215.1 68414.m06180 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 169
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/68 (26%), Positives = 25/68 (36%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 676
P PP + +PP P P I+P + QPP R N+
Sbjct: 59 PPPPPPAVNMSVETGIPPPP----PPVTDMIKPLSSPPPPQPPPRSQPPPKPPQKNLPRR 114
Query: 677 YRPAPRAP 700
+ P PR+P
Sbjct: 115 HPPPPRSP 122
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 261 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 377
FG I + + L+ G KG+ + + EEA A++ MNG
Sbjct: 118 FGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family
protein
Length = 846
Score = 28.3 bits (60), Expect = 5.3
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Frame = +2
Query: 437 SALNISVHAENG*Y--AHAANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRW 610
S L+ H +G Y H + PP + P AP Y P QM++ + P +
Sbjct: 723 SGLSFQDHRSSGPYPSVHQPTASSPPPPPETQNPSHPHPHAPYYRPPEQMSRPGYSIPPY 782
Query: 611 NAQPPVR-PSTQAASAY---ANMQP 673
PP P QA Y A QP
Sbjct: 783 GPPPPYHTPHGQAPQPYPPQAQQQP 807
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASA-YANMQPTYRPAPRAP 700
PP P P T P PR PPV A A +A +QP P P P
Sbjct: 249 PPPPPVVDPPPATHRAPPVPR---IPPVSGVPPAPFAPFAPLQPQQHPPPSPP 298
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/64 (28%), Positives = 37/64 (57%)
Frame = +1
Query: 43 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDD 222
E I L+G+E V +PL V ++ K+ E++ K E+ +++ +R + NL+V + ++
Sbjct: 428 ESVPIALDGEEQVMDRPLGV-KSSKQKEKKVATKTMLEEREADSRSRLE--NLWVLDEEE 484
Query: 223 TIDD 234
+ D
Sbjct: 485 QVMD 488
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP- 673
P P + G+ P P P YYG + + TT PP PS ++ + + P
Sbjct: 229 PYPPQNSYFGYSNPVPGPGPGYYGSSSAS----TTAAATKPPPPPPSPPRSNGWDFLNPF 284
Query: 674 -TYRPAPRAPA 703
TY P P P+
Sbjct: 285 DTYYP-PYTPS 294
>At4g27370.1 68417.m03929 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1126
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 70 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 210
K LVE K + ++ AE + LK +FE+ K + TR + V+
Sbjct: 1063 KSLVEVKSDSISNRKQHAEELRRLKSRFEKWKKDYKTRLRETKARVR 1109
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +2
Query: 530 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRP--STQAASAYANMQPTY 679
+V S PP P YY P+ + P P + PP P S Y + P Y
Sbjct: 206 YVYSFPPPPPYYSPSPKVGYKSPPAPYVYSSPPPPPYYSPSPKVNYKSPPPPY 258
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +2
Query: 530 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRP--STQAASAYANMQPTY 679
++ S PP P YY P+ + P P + PP P S Y + P Y
Sbjct: 154 YIYSSPPPPPYYSPSPKVDYKSPPPPYVYSSPPPPPYYSPSPKVEYKSPPPPY 206
>At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family
protein sequencing discrepancy between cDNA and genomic
sequence prevents representation of entire coding
sequence
Length = 578
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/78 (29%), Positives = 32/78 (41%)
Frame = +2
Query: 461 AENG*YAHAANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPST 640
A G +AN PPS S +P PP P+ P + P + + PP R T
Sbjct: 457 AMTGDVTPSANRVRSPPSPRS--VMP--PPPPKTIAPPPSKTMSPPSSKSMLPPPPRSKT 512
Query: 641 QAASAYANMQPTYRPAPR 694
+ + +M P P PR
Sbjct: 513 MSPLSSKSMLP---PPPR 527
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 76 LVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 174
L E P Y R + ER+K +K K +Q ++ER
Sbjct: 554 LDEKYPAYKDRHKLAVEREKHIKHKADQARAER 586
>At3g25240.1 68416.m03153 hypothetical protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 281
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 625 RGLCIPPWSCRSYLSH 578
RGL +PPW SYL H
Sbjct: 222 RGLSLPPWRRSSYLQH 237
>At2g35230.2 68415.m04322 VQ motif-containing protein contains
PF05678: VQ motif
Length = 295
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Frame = +2
Query: 503 IPPSGASGFFVPSLPPAPRYYGPAQMTQIRPT-----------TPRWNAQPPVRPSTQAA 649
+PP G VP P+PR+ P +T +P+ +PR+N P++ T
Sbjct: 151 LPPPGLVPSPVPHNLPSPRFNAPVPVTPTQPSPMFSQMYGGFPSPRYNGFGPLQSPT--- 207
Query: 650 SAYANMQPTYRP---APRAP 700
S + PT P +PR+P
Sbjct: 208 SQFLQPSPTGYPNMFSPRSP 227
>At2g35230.1 68415.m04321 VQ motif-containing protein contains
PF05678: VQ motif
Length = 402
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Frame = +2
Query: 503 IPPSGASGFFVPSLPPAPRYYGPAQMTQIRPT-----------TPRWNAQPPVRPSTQAA 649
+PP G VP P+PR+ P +T +P+ +PR+N P++ T
Sbjct: 258 LPPPGLVPSPVPHNLPSPRFNAPVPVTPTQPSPMFSQMYGGFPSPRYNGFGPLQSPT--- 314
Query: 650 SAYANMQPTYRP---APRAP 700
S + PT P +PR+P
Sbjct: 315 SQFLQPSPTGYPNMFSPRSP 334
>At2g31090.1 68415.m03797 expressed protein
Length = 75
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 685 WSVSGLHICICRCCLC 638
W V L CIC CCLC
Sbjct: 32 WIVGLLLSCICPCCLC 47
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Frame = +2
Query: 479 AHAANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQP-PVRPSTQAASA 655
A A P P+ A P PAP P P P+ P P +P + A
Sbjct: 34 APAPTPPKPKPTPAPTPPKPKPKPAPTPPKPKPAPAPTPPKPKPAPAPTPPKPKPKPAPT 93
Query: 656 YANMQPTYRPAPRAP 700
N +PT P P P
Sbjct: 94 PPNPKPTPAPTPPKP 108
>At5g55565.1 68418.m06925 expressed protein
Length = 64
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 331 KQTNPKPLLRPSSSITFADVIVPNGAILCAD 239
K+ +P L PS A PNGAILC D
Sbjct: 5 KRKHPCDLKNPSKRAPPATCNKPNGAILCGD 35
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +2
Query: 506 PPSGA---SGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPP 625
PP GA +G+ + PPAP Y PA P P + PP
Sbjct: 39 PPPGAYPPAGYPPGAYPPAPGGYPPAPGYGGYPPAPGYGGYPP 81
>At5g09790.1 68418.m01133 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 352
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 377
QR+A GT+ SA L S G +V +P A ++ E G
Sbjct: 150 QRLAQMGTLASALTALGIKYSDGLNYVPGMAPRSANQSKLEKGG 193
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 536 PSLPPA-PRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 691
P+ PP+ P + P Q + PT QPP +P TQ + + PT P P
Sbjct: 24 PTRPPSQPPSHPPIQPSSQPPT------QPPSQPPTQPPTQPPSHPPTQPPTP 70
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 536 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 694
P PP P Y P T ++P P PP P+ +A P Y P P+
Sbjct: 127 PYTPPPPTPYTPPPPT-VKPPPPPVVTPPPPTPTPEAPCPPPPPTP-YPPPPK 177
>At4g08400.1 68417.m01388 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 513
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 530 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTY 679
+V S PP P YY P+ + P P + + PP S Y + P Y
Sbjct: 237 YVYSSPPPP-YYSPSPKVNYKSPPPPYYRSPPPPYYSPSPKVDYKSPPPPY 286
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = +2
Query: 545 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPA 703
PP P P+ + PT P + PPV P + P P P P+
Sbjct: 155 PPTPTPSVPSPTPPV-PTDPMPSPPPPVSPPPPTPTPSVPSPPDVTPTPPTPS 206
>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 607
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPP 625
P+ P G F PPA +YG + P W AQ P
Sbjct: 408 PSSPAYGNQPFSPNFSPPASPHYGGQNNNVLALPPPPWEAQSP 450
>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
similar to DNA-binding protein DF1 [Pisum sativum]
GI:13646986
Length = 603
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 575 QMTQIRPTTPRWNAQPP-VRPSTQAASAYANMQPTYRPAPRAPAHL 709
++++ +P P+ QP VRPS Q + P P P+ PA L
Sbjct: 329 KLSEKQPNQPQPQPQPQQVRPSMQLNNNNQQQPPQRSPPPQPPAPL 374
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 536 PSLPPAPRYYGPAQM-TQIRPTTPRWNAQPPVRPSTQAASAYANMQ 670
P +PP P Y PAQ+ + + PT PP RP Q + AN Q
Sbjct: 50 PLVPPGPPYAPPAQIPSSLLPT--NLPPPPPFRPGMQ-FTPVANFQ 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,663,278
Number of Sequences: 28952
Number of extensions: 312938
Number of successful extensions: 1962
Number of sequences better than 10.0: 214
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -