Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20104
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22560.1 68417.m03256 expressed protein                             28   7.6  
At4g21270.1 68417.m03074 kinesin-like protein A (KATA)                 27   10.0 

>At4g22560.1 68417.m03256 expressed protein
          Length = 264

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 207 LRCRSEEFCD-YQWNTKSIIRFSDLPIIVQKSHC 109
           L+C+S+ F D Y +N+KS++  S      + SHC
Sbjct: 9   LQCKSKAFDDVYNFNSKSLMSSSSYNCSRKSSHC 42


>At4g21270.1 68417.m03074 kinesin-like protein A (KATA)
          Length = 793

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 380 FVDPIHILCESNEELGDMPPQ-CSGEM 457
           F +  H+LCE  + L DM  Q C GE+
Sbjct: 390 FEEQKHLLCELQDRLADMEHQLCEGEL 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,190,469
Number of Sequences: 28952
Number of extensions: 265550
Number of successful extensions: 459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)