Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20095
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30070.1 68415.m03658 potassium transporter (KUP1) identical ...    29   2.4  
At1g74680.1 68414.m08648 exostosin family protein contains Pfam ...    29   4.1  
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet...    28   5.5  
At3g22820.1 68416.m02876 allergen-related weak similarity to pol...    28   5.5  
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin...    28   7.2  
At3g03500.1 68416.m00348 tatD-related deoxyribonuclease family p...    28   7.2  
At1g58260.1 68414.m06625 cytochrome P450 family protein similar ...    27   9.5  

>At2g30070.1 68415.m03658 potassium transporter (KUP1) identical to
           potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 712

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 41  GIIELSQVIVSKKQLPLFELIMAKKGVVAFVKDFYYDPFKWS--LVKSVGFFTVGVVIAS 214
           G+ E     V +K+    E++ AK+  VA++    Y   K S  ++K +    V   +++
Sbjct: 628 GLEEEEMSSVRRKKEECMEIMEAKEAGVAYILGHSYAKAKQSSSVLKKLAVNVVFAFMST 687

Query: 215 ECTGLEIMPAMPH 253
            C G +++  +PH
Sbjct: 688 NCRGTDVVLNVPH 700


>At1g74680.1 68414.m08648 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 461

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 379 SSVNMRTKFGRFSSATALFTKNIKNKYCNIVLYLKNN 269
           S++ + + FGR+SSA A   K+I   Y ++V  + NN
Sbjct: 228 SAMFVLSDFGRYSSAIANLEKDIIAPYVHVVKTISNN 264


>At5g27650.1 68418.m03313 PWWP domain-containing protein
           hypothetical protein F22F7.12 - Arabidopsis thaliana,
           EMBL:AC009606
          Length = 1072

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = -1

Query: 445 PSFPINR*TFVIGSIPPKTTS*SSVNMRTKFGRF----SSATALFTKNIKNKYCNIVLYL 278
           PS  +   T ++   PP T+  S+  ++ +FGRF     SA  +F    K+  C +V   
Sbjct: 781 PSVKVVEPTMLVMKFPPGTSLPSAALLKARFGRFGLLDQSAIRVFW---KSSTCRVVFLY 837

Query: 277 KNNINKILMWHSGHD 233
           K +      + +G++
Sbjct: 838 KADAQTAFRYATGNN 852


>At3g22820.1 68416.m02876 allergen-related weak similarity to pollen
           major allergen 2 protein [Juniperus ashei]
           gi|9955725|emb|CAC05582
          Length = 107

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 288 TMLQYLFLIFFVNNAVAELKRPN 356
           T++ Y FL+FF +++ A L+RP+
Sbjct: 7   TLIVYAFLLFFSSSSAASLQRPS 29


>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
           (TUBG2) identical to  SP|P38558 Tubulin gamma-2 chain
           (Gamma-2 tubulin) {Arabidopsis thaliana}
          Length = 474

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 461 LLCDVTDMLSKSSQFATGMYVHNHKTVNNSLHGGCYGENWK--YHE 592
           LL D+   +    Q      ++NH+ +  S HGG  G NW   YH+
Sbjct: 65  LLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ 110


>At3g03500.1 68416.m00348 tatD-related deoxyribonuclease family
           protein weak similarity to SP|P27859 Deoxyribonuclease
           tatD (EC 3.1.21.-) (DNAse tatD) {Escherichia coli};
           contains Pfam profile PF01026: TatD related DNase
          Length = 272

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = +2

Query: 23  KFSLSSGIIELSQVIVSKKQLPLFELIMAKKGVVAFVKDFYYDPFKWSLVKSVGFFTVGV 202
           K  L+ GI    Q++V + QL L + +   K V     D + D  +  +++S+G F  GV
Sbjct: 98  KGPLAGGIDYSDQLVVFRPQLELAKEL--NKPVAVHCIDAFDDLLE--IMRSIGPFPAGV 153

Query: 203 VIASECTGLEIMPAM 247
           ++ S     E++P +
Sbjct: 154 ILHSFNGSAEVVPKL 168


>At1g58260.1 68414.m06625 cytochrome P450 family protein similar to
           cytochrome P450 GI:984542 from [Sorghum bicolor]
          Length = 530

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = +2

Query: 482 MLSKSSQFATGMYVHNHKTVNNSLHGGCYGENWKYHEK------QTFATILQEAGYDTFY 643
           +  +S  +A+ +  H +K ++ S     YGENWK  +K       +  T+ +  GY    
Sbjct: 104 LADRSESYASHLISHGYKNISFS----SYGENWKLVKKVMTTKLMSPTTLSKTLGYRNIE 159

Query: 644 AGNI 655
           A NI
Sbjct: 160 ADNI 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,292,441
Number of Sequences: 28952
Number of extensions: 339530
Number of successful extensions: 853
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)