Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20092
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 71 7e-13
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 71 7e-13
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 65 5e-11
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 61 8e-10
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 57 1e-08
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 56 2e-08
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 56 2e-08
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 56 3e-08
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 56 3e-08
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 54 9e-08
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 52 3e-07
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 52 3e-07
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 50 1e-06
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 40 1e-06
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 48 8e-06
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 46 3e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 5e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 43 2e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 42 4e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 42 5e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 41 7e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 41 7e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 41 7e-04
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 41 0.001
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 41 0.001
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 41 0.001
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 40 0.001
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 40 0.001
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 40 0.002
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 40 0.002
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 40 0.002
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 40 0.002
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 40 0.002
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 39 0.003
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 39 0.003
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 39 0.003
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 39 0.004
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 39 0.004
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 39 0.004
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 39 0.004
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 36 0.004
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 38 0.005
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 38 0.006
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 38 0.006
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 38 0.006
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.008
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.008
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 38 0.008
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 37 0.011
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 37 0.011
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 37 0.011
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 37 0.011
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 37 0.015
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.020
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.020
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 36 0.020
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 36 0.020
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 36 0.026
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 36 0.026
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.034
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.034
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 36 0.034
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 36 0.034
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 36 0.034
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 36 0.034
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 36 0.034
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 35 0.045
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 35 0.045
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 35 0.045
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 35 0.045
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 35 0.045
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 35 0.045
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 35 0.045
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 35 0.045
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.060
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 35 0.060
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 35 0.060
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 35 0.060
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 35 0.060
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 35 0.060
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 35 0.060
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 34 0.079
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 34 0.079
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 34 0.10
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 34 0.10
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.10
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 34 0.10
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 33 0.14
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.14
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 33 0.14
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 33 0.14
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 33 0.14
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 33 0.14
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.18
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 33 0.18
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 33 0.18
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 33 0.18
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 33 0.18
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 33 0.24
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 33 0.24
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 33 0.24
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 33 0.24
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 32 0.32
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 32 0.32
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 32 0.32
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 32 0.32
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 32 0.32
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.32
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 32 0.32
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 32 0.42
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 32 0.42
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 32 0.42
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 32 0.42
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 32 0.42
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 31 0.56
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 31 0.56
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 31 0.56
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.73
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 31 0.73
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 31 0.97
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 31 0.97
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 31 0.97
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 30 1.3
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 30 1.3
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 30 1.3
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 30 1.3
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 30 1.7
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.7
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 30 1.7
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 29 2.2
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 29 2.2
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.2
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 29 2.2
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 29 2.2
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 2.2
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 29 3.0
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 29 3.9
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 29 3.9
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 29 3.9
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 29 3.9
At2g47390.1 68415.m05915 expressed protein 29 3.9
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 29 3.9
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.9
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.9
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.9
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 28 5.2
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 28 5.2
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 28 6.8
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 6.8
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 6.8
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 6.8
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 28 6.8
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 6.8
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 6.8
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 27 9.0
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 27 9.0
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 27 9.0
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 27 9.0
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 27 9.0
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 27 9.0
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 9.0
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 27 9.0
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 27 9.0
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 27 9.0
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 27 9.0
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 70.9 bits (166), Expect = 7e-13
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 11/96 (11%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KA 427
FG YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKG 97
Query: 428 RHG---------KIFVGGLSSEISDDEIRNFFSEFG 508
G KIFVGG+ S +++DE+++FF+++G
Sbjct: 98 AGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG------EHTINNKKVDPK 415
F YG + V D T RSRGF F++F + E +D++++ G + + KK +PK
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Query: 416 KAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
K+ R + S+D ++ +G
Sbjct: 189 KSLNRSPPSYGSHPRGRSSNDSYASYGGPYG 219
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGG 687
D+ Q +GF FITF VV+ +++ I GK+V++KR PK G GG
Sbjct: 53 DRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPK--GAGG 100
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPK 669
++E ++ D N+ +GF F+ F+SE+VV++LL K + +V++K+A PK
Sbjct: 135 VVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 70.9 bits (166), Expect = 7e-13
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 11/96 (11%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KA 427
FG YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKG 97
Query: 428 RHG---------KIFVGGLSSEISDDEIRNFFSEFG 508
G KIFVGG+ S +++DE+++FF+++G
Sbjct: 98 AGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 379
F YG + V D T RSRGF F++F + E +D++++ G
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGG 687
D+ Q +GF FITF VV+ +++ I GK+V++KR PK G GG
Sbjct: 53 DRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPK--GAGG 100
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 609
++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 135 VVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 64.9 bits (151), Expect = 5e-11
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
FG YGEI + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 62 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPRG 120
Query: 434 G---------KIFVGGLSSEISDDEIRNFFSEFG 508
KIFVGG+ S + DDE + FF +FG
Sbjct: 121 SMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFG 154
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVDPKKAKAR 430
F +GE++ + D +TGRSRGF F+ +++ + +D ++A G ++ +V+ KKA+ +
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFESEQVVNDLLKTPKR-TIGGKEVDVKRATPK 669
D + + +GF F+T+ESE +V+ LL R + G +V++K+A PK
Sbjct: 164 DHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 669
D+ Q +GF F+T+ VV+ +++ I GK+V++KR P+
Sbjct: 76 DRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPR 119
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 93 QDITTDNQLNGNAENGGGDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRDH 254
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E H
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKH 61
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFG 508
GKIFVGGL+ E + E F ++G
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYG 66
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 60.9 bits (141), Expect = 8e-10
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 12/97 (12%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK------ 415
FG +GE+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 86 FGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRG 144
Query: 416 ------KAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
KA ++ KIFVGGL + +DE++N+F +G
Sbjct: 145 DKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYG 181
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 430
F YG+I + D +TGRSRGF F+ F+ +S+D++ + G+ H + +K+V+ K+A+ +
Sbjct: 177 FCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDG 678
I+E ++ +D + +GF F+TF++E V+ L K +G K+V++KRA PK G
Sbjct: 183 IIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTG 239
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +3
Query: 102 TTDNQLNGNA--ENGG---GDSQDHNSAXAPGRDDDRKLFVGGLSWETT 233
T D++ NG A + GG S DH + + KLFVGG+SWETT
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETT 78
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFG 508
GK+FVGG+S E + + N+F +FG
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFG 90
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 675
D+ +GF F+TF V +L+ I ++VD+KR P+ D
Sbjct: 100 DRITGNPRGFGFVTFADSAVAEKVLE-EDHVIDDRKVDLKRTLPRGD 145
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 57.2 bits (132), Expect = 1e-08
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 28/113 (24%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 430
FG YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 35 FGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-MDKHIIDGRTVEAKKAVPRD 93
Query: 431 ------------------HG---------KIFVGGLSSEISDDEIRNFFSEFG 508
HG KIFVGGL S I++ E +N+F +FG
Sbjct: 94 DQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFG 146
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +G I + V D NT R RGF FI F + ES+D V+ H +N K V+ K+A
Sbjct: 142 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRA 197
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +1
Query: 508 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 669
TI +V + +D + +GF FITF+SE+ V+ +L + GK V+VKRA PK
Sbjct: 147 TIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPK 200
Score = 34.7 bits (76), Expect = 0.060
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 675
++E + D+T + +GF FI F V ++ K I G+ V+ K+A P+ D
Sbjct: 41 LVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-MDKHIIDGRTVEAKKAVPRDD 94
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDH 254
KLF+GG+SW+T ++ L+++
Sbjct: 16 KLFIGGISWDTDEERLQEY 34
Score = 29.9 bits (64), Expect = 1.7
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +2
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFG 508
GK+F+GG+S + ++ ++ +F ++G
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYG 39
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 25/110 (22%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 430
F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 26 FSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRD 84
Query: 431 ------------------HG------KIFVGGLSSEISDDEIRNFFSEFG 508
HG KIFVGGL S I+++E +N+F +FG
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFG 134
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +1
Query: 508 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGP 681
TI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK P
Sbjct: 135 TIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISP 192
Score = 33.9 bits (74), Expect = 0.10
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLEH 263
KLF+GG+SW+T ++ LRD+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSN 28
Score = 33.1 bits (72), Expect = 0.18
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +2
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFG 508
GK+F+GG+S + ++ +R++FS +G
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYG 30
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 25/110 (22%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 430
F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 26 FSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRD 84
Query: 431 ------------------HG------KIFVGGLSSEISDDEIRNFFSEFG 508
HG KIFVGGL S I+++E +N+F +FG
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFG 134
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +1
Query: 508 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGP 681
TI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK P
Sbjct: 135 TIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISP 192
Score = 33.9 bits (74), Expect = 0.10
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLEH 263
KLF+GG+SW+T ++ LRD+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSN 28
Score = 33.1 bits (72), Expect = 0.18
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +2
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFG 508
GK+F+GG+S + ++ +R++FS +G
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYG 30
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 25/110 (22%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 430
F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 26 FSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRD 84
Query: 431 ------------------HG------KIFVGGLSSEISDDEIRNFFSEFG 508
HG KIFVGGL S I+++E +N+F +FG
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFG 134
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +1
Query: 508 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGP 681
TI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK P
Sbjct: 135 TIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISP 192
Score = 33.9 bits (74), Expect = 0.10
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLEH 263
KLF+GG+SW+T ++ LRD+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSN 28
Score = 33.1 bits (72), Expect = 0.18
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +2
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFG 508
GK+F+GG+S + ++ +R++FS +G
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYG 30
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 56.0 bits (129), Expect = 2e-08
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 25/110 (22%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F YGE+ V D TGR RGF F++F P +D+V+ +H+I+ ++VD K+A +R
Sbjct: 26 FTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSRE 84
Query: 434 -------------------------GKIFVGGLSSEISDDEIRNFFSEFG 508
KIFVGGL ++D+E R +F +G
Sbjct: 85 EQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYG 134
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGG 687
+ +V + +D+ N+ +GF F++F+SE V+ +L + GK+V+VKRA PK PGG
Sbjct: 136 VTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGG 194
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+ K+A +
Sbjct: 130 FEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
Query: 434 GKIFVGGLS 460
GG S
Sbjct: 190 ANPGGGGRS 198
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 189 DDRKLFVGGLSWETTDKELRDH 254
D KLFVGG+SWET + +LR+H
Sbjct: 4 DQGKLFVGGISWETDEDKLREH 25
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFG 508
GK+FVGG+S E +D++R F+ +G
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYG 30
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 675
DK + +GF F+ F V++ +L+ K +I +EVDVKRA + +
Sbjct: 40 DKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSREE 85
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 144 GDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRDHLE 260
G+ S+ + +K+FVGGL TD+E R + E
Sbjct: 93 GNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFE 131
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 21/107 (19%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 26 FHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRD 84
Query: 434 G---------------------KIFVGGLSSEISDDEIRNFFSEFGL 511
KIFVGGL+S +++ E + +F++FG+
Sbjct: 85 DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGM 131
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 669
I +V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 132 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 34.7 bits (76), Expect = 0.060
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDH 254
KLF+GG+SWET++ LRD+
Sbjct: 7 KLFIGGISWETSEDRLRDY 25
Score = 34.3 bits (75), Expect = 0.079
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+F+GG+S E S+D +R++F FG
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFG 30
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 675
+LE + D+ + +GF F+ F V ++ K I GK V+ K+A P+ D
Sbjct: 32 VLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRDD 85
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 174 APGRDDDRKLFVGGLSWETTDKELRDH 254
+PG + +K+FVGGL+ T+ E + +
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKY 125
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 21/107 (19%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 26 FHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRD 84
Query: 434 G---------------------KIFVGGLSSEISDDEIRNFFSEFGL 511
KIFVGGL+S +++ E + +F++FG+
Sbjct: 85 DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGM 131
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 669
I +V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 132 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 34.7 bits (76), Expect = 0.060
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDH 254
KLF+GG+SWET++ LRD+
Sbjct: 7 KLFIGGISWETSEDRLRDY 25
Score = 34.3 bits (75), Expect = 0.079
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+F+GG+S E S+D +R++F FG
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFG 30
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 675
+LE + D+ + +GF F+ F V ++ K I GK V+ K+A P+ D
Sbjct: 32 VLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRDD 85
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 174 APGRDDDRKLFVGGLSWETTDKELRDH 254
+PG + +K+FVGGL+ T+ E + +
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKY 125
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 54.0 bits (124), Expect = 9e-08
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 25/110 (22%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F +GE+ + V + TGR RGF F+ F P ID+V+ +H I+N+ VD K+A +R
Sbjct: 26 FSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL-QDKHHIDNRDVDVKRAMSRE 84
Query: 434 -------------------------GKIFVGGLSSEISDDEIRNFFSEFG 508
KIFVGGL ++ DE R +F +G
Sbjct: 85 EQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYG 134
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 684
D+T + +GF F++F+SE V+ +L + GK+V+VKRA PK PG
Sbjct: 144 DQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKDANPG 193
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F YG + + D T R RGF F+ F + +S+D V+ H +N K+V+ K+A
Sbjct: 130 FETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
Score = 35.5 bits (78), Expect = 0.034
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD-GPGG 687
+L+V + +K + +GF F+ F V++ +L+ K I ++VDVKRA + + P G
Sbjct: 32 VLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD-KHHIDNRDVDVKRAMSREEQSPAG 90
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 189 DDRKLFVGGLSWETTDKELRDHLEH 263
D KLF+GG+SW+T + LR++ +
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSN 28
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFG 508
GK+F+GG+S + ++ +R +FS FG
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFG 30
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 23/108 (21%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---- 421
F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 26 FSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRD 84
Query: 422 -------------------KARHGKIFVGGLSSEISDDEIRNFFSEFG 508
R KIFVGGL S +++ + + +F +FG
Sbjct: 85 DQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFG 132
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = +1
Query: 508 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGG 687
T +V + +D + +GF FIT++SE+ V +L + GK V+VKRA PK PG
Sbjct: 133 TTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGP 192
Query: 688 IR 693
R
Sbjct: 193 SR 194
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 675
++E + D+T + +GF F+ F ++ V +++ T K I G+ V+ K+A P+ D
Sbjct: 32 VIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEKHNIDGRLVEAKKAVPRDD 85
Score = 33.5 bits (73), Expect = 0.14
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = +3
Query: 183 RDDDRKLFVGGLSWETTDKELRDH 254
+ D+ KLF+GG+SW+T ++ L+++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEY 25
Score = 33.5 bits (73), Expect = 0.14
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +2
Query: 431 HGKIFVGGLSSEISDDEIRNFFSEFG 508
+GK+F+GG+S + +++ ++ +FS FG
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFG 30
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 126 NAENGGGDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRDHLE 260
N N S S PGR RK+FVGGL T+ + + + E
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFE 129
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 23/108 (21%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---- 421
F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 26 FSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRD 84
Query: 422 -------------------KARHGKIFVGGLSSEISDDEIRNFFSEFG 508
R KIFVGGL S +++ + + +F +FG
Sbjct: 85 DQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFG 132
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = +1
Query: 508 TILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGG 687
T +V + +D + +GF FIT++SE+ V +L + GK V+VKRA PK PG
Sbjct: 133 TTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGP 192
Query: 688 IR 693
R
Sbjct: 193 SR 194
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 675
++E + D+T + +GF F+ F ++ V +++ T K I G+ V+ K+A P+ D
Sbjct: 32 VIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEKHNIDGRLVEAKKAVPRDD 85
Score = 33.5 bits (73), Expect = 0.14
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = +3
Query: 183 RDDDRKLFVGGLSWETTDKELRDH 254
+ D+ KLF+GG+SW+T ++ L+++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEY 25
Score = 33.5 bits (73), Expect = 0.14
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +2
Query: 431 HGKIFVGGLSSEISDDEIRNFFSEFG 508
+GK+F+GG+S + +++ ++ +FS FG
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFG 30
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 126 NAENGGGDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRDHLE 260
N N S S PGR RK+FVGGL T+ + + + E
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFE 129
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH--- 433
+G++E V D +TGRSRGF ++ F + E + GEH + N+ ++ K A +
Sbjct: 26 FGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KGEHFLGNRILEVKVATPKEEMR 84
Query: 434 ------GKIFVGGLSSEISDDEIRNFFSEFG 508
+IFV + S +S+ + R+ F +G
Sbjct: 85 QPAKKVTRIFVARIPSSVSESDFRSHFERYG 115
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 675
I ++ MP D Q +G FITF S V DL++ +GG V V RATPK D
Sbjct: 117 ITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME-DTHDLGGTTVAVDRATPKED 170
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 406
FG +G I+ + DP RGF F+ F D+V A H I ++V
Sbjct: 260 FGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV-ARRSHEICGQEV 309
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 675
D++ + +GF ++TF S + + LK + +G + ++VK ATPK +
Sbjct: 37 DRSTGRSRGFGYVTFASAEDAKNALK-GEHFLGNRILEVKVATPKEE 82
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD-GP 681
I + +P D ++ +GF F+TF +E V D + I G+EV + ATP + GP
Sbjct: 266 IQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVARRSHEICGQEVAIDSATPLDEAGP 322
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
KIFVG L E S D++R++F FG
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFG 264
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 517 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 669
+V + D N+ +GF F+T++SE V ++++ + K V+VKRA PK
Sbjct: 148 DVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPK 198
Score = 35.5 bits (78), Expect(2) = 1e-06
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 425 ARHGKIFVGGLSSEISDDEIRNFFSEFG 508
+R KIFVGGLSS +++E +++F FG
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFG 144
Score = 34.3 bits (75), Expect(2) = 1e-06
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F YG + V + TG+ RGF F+ F + K + H I K VD +KA +H
Sbjct: 26 FSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL-RDTHFILGKPVDVRKAIRKH 84
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+FVGG++ E S++ ++ +FS +G
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYG 30
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 195 RKLFVGGLSWETTDKELRDHLE 260
+K+FVGGLS TT++E + + E
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFE 141
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 47.6 bits (108), Expect = 8e-06
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV------- 406
+F A+G I S V DP+ G+S+G+ F+ + E+ + +N+K+V
Sbjct: 152 TFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVH 210
Query: 407 ----DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGLS 514
DP K + ++V LS +SD+E+ F EFG++
Sbjct: 211 KLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVT 250
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV------- 406
+F G++ S+ V D T RS G+ ++ + P+ + + +N + +
Sbjct: 64 AFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVR 123
Query: 407 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
DP K+ G IF+ L I + FS FG
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFG 157
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
F +G I S V DP+ G SRG F+ F PE + +
Sbjct: 347 FAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAI 384
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 53 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 108
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 669
I +V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 59 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 111
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 362 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGL 511
K + +H + NK + + KIFVGGL+S +++ E + +F++FG+
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGM 58
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 174 APGRDDDRKLFVGGLSWETTDKELRDH 254
+PG + +K+FVGGL+ T+ E + +
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKY 52
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.1 bits (72), Expect(2) = 5e-05
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 353 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFG 345
Score = 31.1 bits (67), Expect(2) = 5e-05
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVF 340
Y ++S V D NTGRS+G+ F+ F
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRF 251
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 430
+F +YGEIE +V D +TGR +G+ F++FK + + + E + N+ V A +
Sbjct: 427 AFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLASEK 486
Query: 431 HGK 439
GK
Sbjct: 487 PGK 489
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 430
+F YGE+ + D TGRSRGFAF+ F + E M ++ +++ A R
Sbjct: 53 AFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/59 (23%), Positives = 33/59 (55%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGG 687
+++ ++ D+ + +GF F+TF S + ++ ++ + + G+ + V AT + G GG
Sbjct: 60 VVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATERGSGFGG 118
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 41.9 bits (94), Expect = 4e-04
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV--MAAGE------HTIN 394
+F ++G I S V D TGRS+G+ F+ F+ ES IDK+ M + H I
Sbjct: 155 TFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 395 NKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGL 511
++ D R ++V L EI +DE+R F +FG+
Sbjct: 214 RQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGV 254
Score = 33.9 bits (74), Expect = 0.10
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT--------INNKKVD 409
F + S+ V D N RS G+A+I F P + M A +T I D
Sbjct: 69 FKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRD 127
Query: 410 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
P + G IF+ L + I + + FS FG
Sbjct: 128 PSTRLSGKGNIFIKNLDASIDNKALFETFSSFG 160
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 352
F YG + S V +P G SRGF F+ + PE
Sbjct: 352 FSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
F YGEI V D NTGRS+G+ F+ F+ PE+ + A I+ ++ +
Sbjct: 44 FEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRAN 95
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVGGL+WET + LR H E
Sbjct: 25 KVFVGGLAWETQSETLRQHFE 45
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKPDGP 681
ILE + DK + KG+ F+TF + P I G+ + A+ P+P P
Sbjct: 50 ILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLP 109
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+FVGGL+ E + +R F ++G
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYG 48
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVD 409
F + ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 410 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
+ + K+FVG L +S+ E+++ FS++G
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG 130
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVD 409
F + ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 410 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
+ + K+FVG L +S+ E+++ FS++G
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG 130
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 355
F YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 44 FDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVGGL+WET + LR H +
Sbjct: 25 KVFVGGLAWETQSETLRRHFD 45
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+FVGGL+ E + +R F ++G
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYG 48
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 663
ILE + DK + KG+ F+TF + P I G+ + A+
Sbjct: 50 ILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLAS 100
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-------- 406
+F YGEIE D +G+S+G+ FI+FK+ + + I +
Sbjct: 147 AFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIG 206
Query: 407 ----DPKKAKARH-------GKIFVGGLSSEISDDEIRNFFSEFG 508
+P A A+H KI+V +S++I ++ FFS FG
Sbjct: 207 PVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFG 251
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +GEIE + D TGR +GFA V+++ ES K + T + KA
Sbjct: 247 FSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+FVGGL+ E DE+R +F +FG
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFG 41
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKPDGP 681
ILE + DK + KG+ F+TF + P I G++ + A+ P+P P
Sbjct: 43 ILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPP 102
Query: 682 GG 687
G
Sbjct: 103 RG 104
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVGGL+WET E+R + E
Sbjct: 18 KVFVGGLAWETPTDEMRRYFE 38
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+FVGGL+ E DE+R +F +FG
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFG 41
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKPDGP 681
ILE + DK + KG+ F+TF + P I G++ + A+ P+P P
Sbjct: 43 ILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPP 102
Query: 682 GG 687
G
Sbjct: 103 RG 104
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVGGL+WET E+R + E
Sbjct: 18 KVFVGGLAWETPTDEMRRYFE 38
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +GEI V D T RS+GF F+ F+ ES + HTI+ + V+ K A
Sbjct: 29 FERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
Score = 30.7 bits (66), Expect = 0.97
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 660
I+ ++ D + KGF F+TF + + P TI G+ V+ K A
Sbjct: 35 IVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 406
+F YGEI +V D +TGR++GF F++FK + + E + N+ V
Sbjct: 182 AFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTV 233
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDG 678
I E + DK + KGF F+ F++ + LK P++ + + V A P G
Sbjct: 189 ITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLPARPFNSG 244
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 35.9 bits (79), Expect = 0.026
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F +YG++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 434 GKIFVGGLSSEISDDEIRNFF 496
G S+I+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 517 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDG 678
E + FDK + +GF +++ + L P + I GK ++ K A G
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAVDGKKG 248
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 35.9 bits (79), Expect = 0.026
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F +YG++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 434 GKIFVGGLSSEISDDEIRNFF 496
G S+I+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 517 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDG 678
E + FDK + +GF +++ + L P + I GK ++ K A G
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAVDGKKG 248
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEHTINNK---K 403
F +G I S V T + G+SRG+ F+ F+ A ++++ + A + K K
Sbjct: 132 FKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190
Query: 404 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
D K + ++ +++ L +++S+D +R F+EFG
Sbjct: 191 TDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFG 225
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 367
F G I S + D G+S+GF F+ F P E+ID V
Sbjct: 324 FSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAV 361
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/94 (18%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-------- 406
+F + + S+ + D ++GRS + + F + + + + +++ N K+
Sbjct: 43 AFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVR 102
Query: 407 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
P + G +FV L +++ +++ F +FG
Sbjct: 103 APDARRNGVGNVFVKNLPESVTNAVLQDMFKKFG 136
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 427
+F YG++ + D TGRSRGF F+ FK +++ D + ++ + + +A++
Sbjct: 27 AFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQS 86
Query: 428 R 430
R
Sbjct: 87 R 87
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGPGG 687
+++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A + G GG
Sbjct: 34 VIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGG 93
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 427
+F YG++ + D TGRSRGF F+ FK +++ D + ++ + + +A++
Sbjct: 27 AFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQS 86
Query: 428 R 430
R
Sbjct: 87 R 87
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGPGG 687
+++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A + G GG
Sbjct: 34 VIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGG 93
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 355
F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 42 FEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
KIFVGGL+ E D +R +F +FG
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFG 46
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVGGL+WET +R + E
Sbjct: 23 KIFVGGLAWETQRDTMRRYFE 43
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA---TPKPDGP 681
I+E + DK + KG+ F+TF+ + + I G+ + A KP P
Sbjct: 48 IVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPP 107
Query: 682 GGIRH 696
RH
Sbjct: 108 TSPRH 112
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 400
F YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 684
I E + DK + KGF F+ F++ + + LK PK+ I + + A+ P G
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGPAASG 187
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 400
F YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 684
I E + DK + KGF F+ F++ + + LK PK+ I + + A+ P G
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGPAASG 187
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
+F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 59 AFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEVDVKRATPKPDGPG 684
+++ + D+ + +GF F+TF S + + ++ R + G+ V V A + G G
Sbjct: 66 VVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGGG 124
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+F+GG++ + +D +R F+++G
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYG 64
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +2
Query: 266 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 445
GEI + + D ++G S+G+AF+ FK + K + K ++F
Sbjct: 140 GEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLF 199
Query: 446 VGGLSSEISDDEIRNFFSEFG 508
+G + ++DE R + G
Sbjct: 200 IGNIPKNWTEDEFRKVIEDVG 220
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +2
Query: 272 IESINVKTDP-NTGRSRGFAFIVF 340
+E+I + DP NT R+RGFAF+++
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLY 246
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 431 HG-KIFVGGLSSEISDDEIRNFFSEFG 508
HG ++F+GGL ++ ++++R+ E G
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIG 140
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKA 427
+F YG + V D +GRSRGF FI F +++D+ +AA ++ + + KA+
Sbjct: 26 AFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQP 85
Query: 428 RHG 436
G
Sbjct: 86 HQG 88
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGPG 684
++E ++ DK + +GF FITF+ ++ +++ + + G+ + V +A P G G
Sbjct: 33 LVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAG 91
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +3
Query: 186 DDDRKLFVGGLSWETTDKELRDHLE---HTVK*RVLM 287
D + + F+GGL+W T+D+ LRD E H V+ +V++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVL 40
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKK 418
F + + +N+ + T RG F+ E DKV+ ++ +NKK P +
Sbjct: 32 FREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQ 87
Query: 419 AKARHG-------KIFVGGLSSEISDDEIRNFFSEFG 508
K G K+FVG L +S+ E+++ FSE+G
Sbjct: 88 VKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYG 124
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEVDVKRATPKP 672
++E + +D+ + KGF F+T++S Q V + +K+ + G+++ V A +P
Sbjct: 230 VVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARP 284
Score = 34.7 bits (76), Expect(2) = 0.004
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F + G +E + V D TGRSRGF F+ S+ +V AA + N ++D + +
Sbjct: 111 FESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVEAAAQQ-FNGYELDGRPLRVNA 166
Query: 434 G 436
G
Sbjct: 167 G 167
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 430
F G++ V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 224 FSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 23.0 bits (47), Expect(2) = 0.004
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
+++VG LS + D + + FSE G
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQG 228
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +GEI +NV D T RS+G+ F+ FK ES + TI + + K A
Sbjct: 33 FKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLA 88
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/85 (17%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 GAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMAAGEHTINNKKVDPKKAKARH 433
G+ GE+ + + + ++G +G+AF+ F++ + + + + K++ +A+H
Sbjct: 113 GSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKH 172
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFG 508
++F+G + + +I+ + G
Sbjct: 173 -RLFLGNVPRNWMESDIKKAANRIG 196
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 502 IWTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGKEV 645
I + EV + +K KG+ F+TF S+ + + + T T GK +
Sbjct: 115 IGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 355
F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/86 (23%), Positives = 39/86 (45%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
FG GE+ + + +P T +S+G AF+ F E + + + + N K A +
Sbjct: 234 FGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDN 293
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFGL 511
+FVG + + + +R +G+
Sbjct: 294 DTLFVGNICKIWTPEALREKLKHYGV 319
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVD 409
F YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 410 PKKAKARHGKI 442
P K G++
Sbjct: 96 PNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVD 409
F YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 410 PKKAKARHGKI 442
P K G++
Sbjct: 96 PNAEKISKGRV 106
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
F +GEI + TD TG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 37 FDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKAN 88
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2
Query: 431 HGKIFVGGLSSEISDDEIRNFFSEFG 508
H K+FVGGL+ E DE+R +F +FG
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFG 41
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKPDGP 681
ILE + DK + KG+ F+TF + P I G++ + A+ P+P P
Sbjct: 43 ILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTP 102
Query: 682 GG 687
G
Sbjct: 103 RG 104
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVGGL+WET E+R + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFD 38
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
+F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 30.7 bits (66), Expect = 0.97
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 111 NQLNGNAENGGGDSQDHNSAXAPG--RDDDRKLFVGGLSWETTDKELR 248
N+L+G G S + G R KLFVGGLSW T D L+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLK 52
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+FVGGLS D ++ F+ FG
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFG 59
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
+F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 30.7 bits (66), Expect = 0.97
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 111 NQLNGNAENGGGDSQDHNSAXAPG--RDDDRKLFVGGLSWETTDKELR 248
N+L+G G S + G R KLFVGGLSW T D L+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLK 52
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+FVGGLS D ++ F+ FG
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFG 59
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 418
+FG YG I S V D + G+SR F F+ F+ PE + + A +N KK D K+
Sbjct: 244 TFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEA----LNGKKFDDKE 294
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI-NNKKVDPKKAKAR 430
F G++ +++ DP T SRGF FI K+ ++ + + +H++ + + +KA+ R
Sbjct: 95 FAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRR 154
Query: 431 HGK 439
G+
Sbjct: 155 RGR 157
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 373
+F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 53 AFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 373
Y + V TDP+TGRS+G+ F+ F ++ MA
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
F YG + S+ V D GRSRGF F+ F PE+ K M
Sbjct: 222 FSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVF 340
FG YG+I S V N GRS+GF F+ F
Sbjct: 324 FGCYGQIVSAKVMCHEN-GRSKGFGFVCF 351
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES-------IDKVMAAGEHTINNKKVDP 412
F +G I S V + G+S+GF F+ F +S + M G+ K ++
Sbjct: 132 FCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINK 189
Query: 413 KKAKARHG-----KIFVGGLSSEISDDEIRNFFSEFG 508
+ A G ++V L ++DD + FS++G
Sbjct: 190 DERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYG 226
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 27 FEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+FVGGL+ E +RN+F +FG
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFG 31
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVGGL+WET LR++ E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFE 28
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 27 FEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+FVGGL+ E +RN+F +FG
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFG 31
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVGGL+WET LR++ E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFE 28
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 35.9 bits (79), Expect = 0.026
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Frame = +2
Query: 269 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 415
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 416 KAKARHG---KIFVGGLSSEISDDEIRNFFSE 502
K +G IFVG LS ++SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.9 bits (79), Expect = 0.026
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Frame = +2
Query: 269 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 415
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 416 KAKARHG---KIFVGGLSSEISDDEIRNFFSE 502
K +G IFVG LS ++SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 440 IFVGGLSSEISDDEIRNFFSEFG 508
IFVGGL S ++D++++ F+EFG
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFG 328
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA------GEHTINNKKVDP 412
+F +G+I + + +TGRSRGF FI F ++D+ + G+ I+ + +P
Sbjct: 26 AFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEP 85
Query: 413 K 415
K
Sbjct: 86 K 86
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 425 ARHG-KIFVGGLSSEISDDEIRNFFSEFG 508
A+ G +IFVGGLS E++D ++ FS FG
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFG 31
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGPGG 687
IL+ ++ ++ + +GF FITF + +++ ++ R G + + V RA PK G
Sbjct: 33 ILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDG 92
Query: 688 IRH 696
H
Sbjct: 93 ESH 95
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
+F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGPGG 687
+++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A + G GG
Sbjct: 32 VIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSGGGG 91
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
+F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGPGG 687
+++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A + G GG
Sbjct: 32 VIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSGGGG 91
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
+F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGPGG 687
+++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A + G GG
Sbjct: 32 VIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSGGGG 91
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 532 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 672
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 346
+F YGEIE D +G+S+G+ FI++K+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 532 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 672
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 346
+F YGEIE D +G+S+G+ FI++K+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 532 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 672
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 346
+F YGEIE D +G+S+G+ FI++K+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 35.1 bits (77), Expect = 0.045
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 440 IFVGGLSSEISDDEIRNFFSEFG 508
IFVGGL + ++DDE+++ F +FG
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFG 284
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVF 340
YG ++ V D TGRS+G+ F+ F
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRF 203
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 373
+FG + V + NTGRSRGF FI F++ E++ +A
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALA 278
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
FG G + + + D T RSRGF F+ + E + M N+ ++ + K
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM----QMFNSSQIGGRTVKVNF 191
Query: 434 GKIFVGGLSSEISDDEIRN 490
++ GG +E+ +IR+
Sbjct: 192 PEVPRGG-ENEVMRTKIRD 209
Score = 30.7 bits (66), Expect = 0.97
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 508 TILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDV 651
T+++V++ +DK ++ +GF F+T S E+ + IGG+ V V
Sbjct: 141 TVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKA 421
F G++ S V P T +S GF F+ F + E ++ ++A + +K+ KA
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
+G +E + V D +GRSR F F K+ E + V+
Sbjct: 99 HGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV 134
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 35.1 bits (77), Expect = 0.045
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVF 340
+F ++GE+ + + D +GRSRGF F+ F
Sbjct: 60 AFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+F+GGLS + + +++ FS FG
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFG 65
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRD 251
KLF+GGLSW ++ L+D
Sbjct: 42 KLFIGGLSWSVDEQSLKD 59
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 358
F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 64 FNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 684
+ + ++ D+ + KGF F+TF+ E D ++T + G+E+D + T + G G
Sbjct: 70 VFDSKIIIDRETGRSKGFRFVTFKDE----DSMRTAIDRMNGQELDGRNITAQARGSG 123
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 35.1 bits (77), Expect = 0.045
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 24/110 (21%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE----SIDKV--MAAGEHTI----NNK 400
+FG YG+I S V D +G SR F F+ F +PE +++K+ ++ GE + K
Sbjct: 244 TFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK 302
Query: 401 KVDPKK--------------AKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
K D ++ K + +++ L ++D++++ FSE+G
Sbjct: 303 KSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYG 352
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKV-------D 409
F + ++ V D T RS G+A++ F PE + M + + I ++ + D
Sbjct: 65 FNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRD 123
Query: 410 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
P + G +F+ L + I + + FS FG
Sbjct: 124 PSTRLSGKGNVFIKNLDASIDNKALYETFSSFG 156
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 352
F YG + S V + + G SRGF F+ + PE
Sbjct: 348 FSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 427
+F YG+I + +TGR RGF FI F D + + NK + KA+
Sbjct: 31 TFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEP 90
Query: 428 RHG 436
+ G
Sbjct: 91 KVG 93
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRATPKPDG 678
I E ++ + + +GF FITF + +D +K R +G K + V +A PK G
Sbjct: 38 ITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGG 94
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +3
Query: 192 DRKLFVGGLSWETTDKEL 245
+ ++FVGGLSW+ T+++L
Sbjct: 11 ESRIFVGGLSWDVTERQL 28
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 427
+F YG+I + +TGR RGF FI F D + + NK + KA+
Sbjct: 31 TFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEP 90
Query: 428 RHG 436
+ G
Sbjct: 91 KVG 93
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRATPKPDG 678
I E ++ + + +GF FITF + +D +K R +G K + V +A PK G
Sbjct: 38 ITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGG 94
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +3
Query: 192 DRKLFVGGLSWETTDKEL 245
+ ++FVGGLSW+ T+++L
Sbjct: 11 ESRIFVGGLSWDVTERQL 28
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.060
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVF 340
F A+G +E + + DP TG+ +GF FI F
Sbjct: 285 FEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 34.7 bits (76), Expect = 0.060
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLEH 263
KLF+GGLSW T D LRD H
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVF 340
+F +G++ V D TGRSRGF F+ F
Sbjct: 54 AFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+F+GGLS D +R+ F+ FG
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFG 59
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 34.7 bits (76), Expect = 0.060
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLEH 263
KLF+GGLSW T D LRD H
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVF 340
+F +G++ V D TGRSRGF F+ F
Sbjct: 54 AFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+F+GGLS D +R+ F+ FG
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFG 59
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 34.7 bits (76), Expect = 0.060
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 251 SFGAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 400
+F A+G I S + DP+TG SRGF FI + + E+ D + + G++ N +
Sbjct: 131 TFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQ 183
Score = 31.1 bits (67), Expect = 0.73
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +2
Query: 266 GEIESINVKTDPNTGRSRGFAFIVFKAPESID---KVMAA----GEHTINNKKVDPKKAK 424
G + ++ V D T + + FI +++ E D KV+ G+ NK KK+
Sbjct: 49 GPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSL 108
Query: 425 ARHGKIFVGGLSSEISDDEIRNFFSEFGL 511
+F+G L ++ + + + FS FG+
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGV 137
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 34.7 bits (76), Expect = 0.060
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
+FG++G+I V D +G SRGF F+ + + E + M A + NK++D
Sbjct: 55 AFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA----MQNKELD 103
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEVDVKRATPKPDGPGG 687
I++ + D+ +GF F+T++S +V N+ ++ + + G+ + V A G GG
Sbjct: 62 IVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPADSGGGGGGG 121
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 34.7 bits (76), Expect = 0.060
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +2
Query: 440 IFVGGLSSEISDDEIRNFFSEFG 508
+FVGGL + ++DD ++N FS++G
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYG 285
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 34.7 bits (76), Expect = 0.060
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +2
Query: 440 IFVGGLSSEISDDEIRNFFSEFG 508
+FVGGL + ++DD ++N FS++G
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYG 285
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
+FG +GEI+++N+ D +G +G+A I ++ E ++A
Sbjct: 114 AFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISA 155
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +2
Query: 440 IFVGGLSSEISDDEIRNFFSEFG 508
IFVGGL S ++D++++ FSEFG
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFG 330
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 434 GK 439
GK
Sbjct: 731 GK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 434 GK 439
GK
Sbjct: 731 GK 732
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 266 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 373
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 260 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
++G + N+ D TG S+G+AF V++ P D AA
Sbjct: 397 SFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Score = 31.1 bits (67), Expect = 0.73
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 430
F G +E V + +T +SRGF F+ E +K V +N +++ +A R
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
Query: 431 HG-------------KIFVGGLSSEISDDEIRNFFSEFG 508
+I+VG L ++ + FSE G
Sbjct: 193 GSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHG 231
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 373
F +G + S V DPN G S+G F+ F PE + M+
Sbjct: 152 FSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 190
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 359 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
DK + G + ++ D K + ++V L+ +DD+++N F E+G
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYG 53
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKV 406
F +G + + + D TG+ +G F+ + + D+ + A G + +
Sbjct: 140 FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYA 199
Query: 407 DPKKAK--ARHGKIFVGGLSSEISDDEIRNFFSEFG 508
D ++ + K+FVG L+ + ++ E+ F +FG
Sbjct: 200 DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG 235
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKV 406
F +G + + + D TG+ +G F+ + + D+ + A G + +
Sbjct: 140 FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYA 199
Query: 407 DPKKAK--ARHGKIFVGGLSSEISDDEIRNFFSEFG 508
D ++ + K+FVG L+ + ++ E+ F +FG
Sbjct: 200 DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG 235
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFI 334
F GE+ ++V TD TG SRGFA+I
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYI 529
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 341 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
K ++ V A + K + + +F G LS +I+ +I NFF E G
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAG 408
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFK 343
SF A+ V D TGRSRGF F+ F+
Sbjct: 167 SFSAFNSCSDARVMWDQKTGRSRGFGFVSFR 197
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFK 343
+F +G++ + D +GRSRGF F+ FK
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGG 636
+++ ++ D+ + +GF F+TF+ E+ + D ++ + GG
Sbjct: 32 VIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGSGGG 73
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 264 FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 28.3 bits (60), Expect = 5.2
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKA-PESIDKVMAAGEHTINNKKVDPKKAKAR 430
F G +E V + T +SRGF F+ + E+ V + +N + + KA R
Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
Query: 431 HG-------------KIFVGGLSSEISDDEIRNFFSEFG 508
+++VG L ++ + + FSE G
Sbjct: 230 GSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHG 268
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 508 TILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRATPKPDGP 681
T+ E+ +++ +Q +GF F+T S ++ + K + + G+ + V +A P+ P
Sbjct: 175 TVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRP 233
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
F +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 31.1 bits (67), Expect = 0.73
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVGGL+WET + ++ H E
Sbjct: 14 KVFVGGLAWETHKETMKKHFE 34
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
F +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 31.1 bits (67), Expect = 0.73
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVGGL+WET + ++ H E
Sbjct: 14 KVFVGGLAWETHKETMKKHFE 34
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
F +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 31.1 bits (67), Expect = 0.73
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVGGL+WET + ++ H E
Sbjct: 14 KVFVGGLAWETHKETMKKHFE 34
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 532 FDKTKNQRKGFC--FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGGIR 693
F +T+ G C F+ FE V + +K +GG++V ++ P P G G R
Sbjct: 289 FLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRGAR 344
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 532 FDKTKNQRKGFC--FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGGIR 693
F +T+ G C F+ FE V + +K +GG++V ++ P P G G R
Sbjct: 348 FLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRGAR 403
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG--------EHTINNKKVD 409
F +G ++ + V + TG+S+ F FI F+ PE + +AAG EH + ++
Sbjct: 80 FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIE 137
Query: 410 PKKAK 424
P+ K
Sbjct: 138 PENVK 142
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 373
F +G I S V D TGR+R FAF+ F + E D ++
Sbjct: 232 FSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
Score = 31.1 bits (67), Expect = 0.73
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 25/110 (22%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH--------- 385
F +G + S+ V +P TG SRG ++ A S+D G
Sbjct: 128 FQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDM 187
Query: 386 ---TINNKKV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFG 508
T N +V PKK +++H K++VG L D +RN FS+FG
Sbjct: 188 NPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFG 236
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
+F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 50 AFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 407 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
+P++ + GKIFVG L + I E FF +FG
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFG 189
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVDPKKAK 424
F + I+ + + D T SRGFAF+ F + E K + A T N K + AK
Sbjct: 478 FSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
Query: 425 ARHG 436
+ HG
Sbjct: 538 SVHG 541
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 385
+G + + V + N+G SRGFAFI F ++ +M EH
Sbjct: 321 WGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
+F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 40 AFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEV 645
+L+V++ DK + + KGF ++TF S E+ LL+ + + G+ V
Sbjct: 47 VLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 391
F ++GEI + V TG S G+A+I K E +K + G H +
Sbjct: 258 FSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGRHDV 301
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 374 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
AG H N D ++ + IFVGGL ++++++++ FS+FG
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFG 351
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 257 GAYGEIESINVKTDPNTGRSRGFAFIVF 340
G Y ++ V D NTGRS+G+ F+ F
Sbjct: 235 GRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 406
F G++ +++ DP T SRGF FI K+ ++ + + +H++ +V
Sbjct: 65 FAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 115
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPK 415
+F YG + V D T RSRGF F+ + + + ++ + +N ++V K
Sbjct: 22 AFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVK 77
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 361
F + G +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 430
F G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 269 FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 672
++E + +D+ + KGF F+T S Q V + + + G+++ V A +P
Sbjct: 275 VVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 329
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 361
F + G +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 430
F G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 277 FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 672
++E + +D+ + KGF F+T S Q V + + + G+++ V A +P
Sbjct: 283 VVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFK 343
SF + V D TGRSRGF F+ F+
Sbjct: 163 SFSVFSSCSDARVMWDQKTGRSRGFGFVSFR 193
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.9 bits (69), Expect = 0.42
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVF 340
F + GEI++++V D +TG S+G A++ F
Sbjct: 425 FSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGG 687
++E ++ D+ ++ KGF F+TF S ++ L++ + + G+ + V A K GG
Sbjct: 60 VVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKA 427
+F G++ + D + RS+GF F+ F + + K +M +N + + AKA
Sbjct: 53 AFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKA 112
Query: 428 R 430
+
Sbjct: 113 K 113
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 373
F +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 536 FNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.5 bits (68), Expect = 0.56
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 21/106 (19%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKK 418
F + + +N+ + T RG F+ E DKV+ ++ +NKK P +
Sbjct: 32 FREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQ 87
Query: 419 AKARHG----------------KIFVGGLSSEISDDEIRNFFSEFG 508
K G K+FVG L +S+ E+++ FSE+G
Sbjct: 88 VKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYG 133
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 272 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 424
IE++ V DP+ +G A+++FK E+ + V+ G + +++ + K
Sbjct: 313 IEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVK 363
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINN 397
F +G++ + V D +T +SRG AF+++ + E K + + I N
Sbjct: 77 FSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILN 124
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 352
F A+GEI + + D RS+G+AFI F + +
Sbjct: 60 FSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFGLS*KWRCPL 535
K++VGG+ + ++DEIR++F G+ K C +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKM 194
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 162 NSAXAPGRDDD-RKLFVGGLSWETTDKELR 248
+S AP D ++++G L+W+TT++++R
Sbjct: 250 SSGFAPEMVDGYNRVYIGNLAWDTTERDIR 279
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 343
F Y V D TGRSRGF F+ F+
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFR 188
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 373
+F +GE+ V TD +G S+GF F+ + E K +A
Sbjct: 75 AFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
F YG+I + +D T RS+G+ F+ FK ++ + IN ++ +
Sbjct: 37 FIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRAN 88
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDH 254
K+FVGGL+W+T + + DH
Sbjct: 18 KVFVGGLAWDTHKEAMYDH 36
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
F +G + + V D TG SRGF F+ F + E + +
Sbjct: 233 FHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKAR 430
F +G + + D +TG+SR F F+ F+ +S+ D +M V+ ++K
Sbjct: 27 FSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMI--------MDVEESRSKC- 77
Query: 431 HGKIFVGGLSSEISDDEIRNFFSEFGL 511
+ VG ++ E++ +N +EF L
Sbjct: 78 ---VNVGSITVEVARQRRKNRSAEFAL 101
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
F +G+I+ + D T R +GF FI F + + K +
Sbjct: 27 FSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 648
I E + D + KGF FITF+SE LK ++ GK VD
Sbjct: 33 IKEARLIRDSETQRPKGFGFITFDSEDDARKALK----SLDGKIVD 74
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 376
F +GE+ES+++ T R G AF+ FK A S+ + AA
Sbjct: 581 FTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKA 427
+F G + + T+ + RGFAF+ F E +++ + T+ +++ K+A
Sbjct: 39 AFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAH 98
Query: 428 R 430
R
Sbjct: 99 R 99
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 29.9 bits (64), Expect = 1.7
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Frame = +2
Query: 275 ESINVKTDPNTGRSRGFAFIVFKAPE-------SIDKVMAAGEHTINNKKVDPKKAK--- 424
E + V + +TG+SRGFAF+ E ++D G N PK K
Sbjct: 112 ELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL 171
Query: 425 --ARHGKIFVGGLSSEISDDEIRNFFSEFG 508
K+FVG LS ++ + + F E G
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAFRECG 201
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
+F G++ V D +TGRSRG+ F+ + + ++ +
Sbjct: 196 AFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 24/106 (22%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN---------NKK-- 403
Y ++ V D TGRS+G+ F+ F + M G++ + NKK
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
Query: 404 -VDPKKAKARHGK----------IFVGGLSSEISDDEIRNFFSEFG 508
+ P + G IFVG + +++D++++ F +FG
Sbjct: 257 TMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFG 302
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVF 340
F +YG I+ +++ TD T + +G+AFI +
Sbjct: 158 FESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 78 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAXAPGRDDDR 197
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 75 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 167
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
KIFVG L+ + D++R +F +FG
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFG 36
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
K+FVG L+W TT +LR + E
Sbjct: 13 KIFVGNLTWRTTADDLRRYFE 33
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 320 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 499
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 500 EFG 508
+FG
Sbjct: 99 QFG 101
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 198 KLFVGGLSWETTDKELRDHLE 260
KL+V GLS+ TT+ LRD E
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFE 98
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE--VDVKRAT 663
D T + KGF F FES E ++ + +RTI G+E V+V +AT
Sbjct: 237 DPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNVNQAT 282
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 430
F +G ++ + + + R F F+ F PE++ ++A G H + + +V K K +
Sbjct: 176 FSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEK 231
Query: 431 HGKI 442
GK+
Sbjct: 232 -GKV 234
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 377 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
GE NN + + + + VG +SS + D E++ F +FG
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFG 241
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
F +G + +V D T SRGF F+ F + E + +
Sbjct: 194 FRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 430
F +G ++ + + + R F F+ F PE++ ++A G H + + +V K K +
Sbjct: 279 FSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEK 334
Query: 431 HGKI 442
GK+
Sbjct: 335 -GKV 337
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 147 DSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRDHLE 260
DS+D + + +P +KLF+ GLS+ T++K LR E
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFE 303
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 355
+F +GE+ + + D + RS+G+AF+ + E+
Sbjct: 301 AFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 120 NGNAENGGGDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRD 251
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 120 NGNAENGG--GDSQDHNSAXAPGRDDDR 197
+GN E G GD D++ PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 105 TDNQLNGNAENGGGDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRDHL 257
T NG GGG + + P R + ++ V GL + ++L+DH+
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHM 139
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 105 TDNQLNGNAENGGGDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRDHL 257
T NG GGG + + P R + ++ V GL + ++L+DH+
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHM 139
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 105 TDNQLNGNAENGGGDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRDHL 257
T NG GGG + + P R + ++ V GL + ++L+DH+
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHM 139
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 660
D+ + KGF FITFESE LK + + G+ + V+ A
Sbjct: 100 DQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 251 SFGAYGEIESI----NVKTDPNTGRSRGFAFIVFK 343
SF A+ S V D TGRSRGF F+ F+
Sbjct: 167 SFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFR 201
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 430
F +G ++ + + + R F F+ F PE++ V+A G H I + +V K K +
Sbjct: 280 FSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEK 335
Query: 431 HGKI 442
GK+
Sbjct: 336 -GKV 338
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 260 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 260 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 260 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 443 FVGGLSSEISDDEIRNFFSEFG 508
+VG L S+ +++++N FS+FG
Sbjct: 11 YVGNLESDTEENDLKNAFSQFG 32
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKA 427
FG +GE+ + + D RG ++ FKA +K + ++ ++D K KA
Sbjct: 118 FGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----AQLYMDGAQIDGKVVKA 171
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKA 427
FG +GE+ + + D RG ++ FKA +K + ++ ++D K KA
Sbjct: 118 FGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----AQLYMDGAQIDGKVVKA 171
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 361
F GEI+ I + D NT GF F++F + E +
Sbjct: 54 FSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 72 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAXAPGRDDDRKL 203
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 440 IFVGGLSSEISDDEIRNFFSEFG 508
+FV G S +S+ ++ FSEFG
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFG 82
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 440 IFVGGLSSEISDDEIRNFFSEFG 508
+FV G S +S+ ++ FSEFG
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFG 82
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 440 IFVGGLSSEISDDEIRNFFSEFG 508
+FV G S +S+ ++ FSEFG
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFG 101
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 308 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 406
G SRGFAFI F++ +S + M + + +K+
Sbjct: 54 GESRGFAFIEFESADSAGRAMLHMDGRLIGQKI 86
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVF 340
F +G + + + D +G+ RGFAF+ F
Sbjct: 67 FERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 27.5 bits (58), Expect = 9.0
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
FGAYGEI I + PN R + + E+ K + E I K + K +R
Sbjct: 290 FGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRSE--IGGKCI--KLELSRP 343
Query: 434 G---KIFVGGLSSEISDDEIRNFFSEFG 508
G ++ V S ++ E+ NF+++ G
Sbjct: 344 GGARRLSVPSQSQDLERTEVTNFYNQVG 371
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 27.5 bits (58), Expect = 9.0
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
FGAYGEI I + PN R + + E+ K + E I K + K +R
Sbjct: 303 FGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRSE--IGGKCI--KLELSRP 356
Query: 434 G---KIFVGGLSSEISDDEIRNFFSEFG 508
G ++ V S ++ E+ NF+++ G
Sbjct: 357 GGARRLSVPSQSQDLERTEVTNFYNQVG 384
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 407 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
DP + G +FV L I + ++ + FS FG
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFG 55
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 150 SQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRDHL 257
S ++++ AP R D ++ V GL + ++L+DH+
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHM 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,164
Number of Sequences: 28952
Number of extensions: 334415
Number of successful extensions: 1617
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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