Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20014
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...    91   7e-19
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...    91   7e-19
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...    89   3e-18
At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR ...    28   4.1  
At3g52290.1 68416.m05747 calmodulin-binding family protein simil...    28   4.1  
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    28   4.1  
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro...    28   5.4  
At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ...    28   5.4  
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote...    27   9.5  
At4g19570.1 68417.m02877 DNAJ heat shock N-terminal domain-conta...    27   9.5  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    27   9.5  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    27   9.5  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 41/68 (60%), Positives = 51/68 (75%)
 Frame = +3

Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
           N+I GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S 
Sbjct: 82  NLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSE 141

Query: 435 KQKDELII 458
           K KDE+++
Sbjct: 142 KVKDEIVL 149



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 32/81 (39%), Positives = 57/81 (70%), Gaps = 5/81 (6%)
 Frame = +1

Query: 28  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 192
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 193 EKWFGSKKELAAVRTVCSHVE 255
           + WFG++K  A++RT  SHV+
Sbjct: 61  DSWFGTRKTSASIRTALSHVD 81



 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +1

Query: 517 VKNKDIRKFLDGLYVSEKTTVVLDD 591
           VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 170 VKKKDIRKFLDGIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 41/68 (60%), Positives = 51/68 (75%)
 Frame = +3

Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
           N+I GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S 
Sbjct: 82  NLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSE 141

Query: 435 KQKDELII 458
           K KDE+++
Sbjct: 142 KVKDEIVL 149



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 32/81 (39%), Positives = 57/81 (70%), Gaps = 5/81 (6%)
 Frame = +1

Query: 28  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 192
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 193 EKWFGSKKELAAVRTVCSHVE 255
           + WFG++K  A++RT  SHV+
Sbjct: 61  DSWFGTRKTSASIRTALSHVD 81



 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +1

Query: 517 VKNKDIRKFLDGLYVSEKTTVVLDD 591
           VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 170 VKKKDIRKFLDGIYVSEKSKIVEEE 194


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 41/68 (60%), Positives = 50/68 (73%)
 Frame = +3

Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
           N+I GVT+GF Y+MR VYAHFPIN      N  IEIRNFLGEK +R+V+M  GV +V S 
Sbjct: 82  NLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSE 141

Query: 435 KQKDELII 458
           K KDE+I+
Sbjct: 142 KVKDEIIL 149



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 34/81 (41%), Positives = 57/81 (70%), Gaps = 5/81 (6%)
 Frame = +1

Query: 28  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 192
           MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 193 EKWFGSKKELAAVRTVCSHVE 255
           + WFGS+K  A++RT  SHV+
Sbjct: 61  DSWFGSRKTSASIRTALSHVD 81



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +1

Query: 517 VKNKDIRKFLDGLYVSEKTTVVLDD 591
           VK KDIRKFLDG+YVSEK  + +++
Sbjct: 170 VKKKDIRKFLDGIYVSEKGKIAVEE 194


>At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 885

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 292 LYWKPLVTPLIMFLHVNRLSSRRQAPF 212
           +YW PL  P++ +L + R    R+ PF
Sbjct: 795 IYWTPLPFPVLEYLVIRRCPELRRLPF 821


>At3g52290.1 68416.m05747 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 430

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -2

Query: 284 EAFSYSFNHVSTCEQTVLTAASSFLDPNH 198
           +A +Y+F+H +T + +    + +F+DPN+
Sbjct: 225 KALAYAFSHQNTWKNSTKMGSQTFMDPNN 253


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +1

Query: 49  QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 192
           +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P L  V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251


>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
           protein similar to meiotic asynaptic mutant 1
           [Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
           oleracea var. alboglabra] GI:23506946; contains Pfam
           profile PF02301: HORMA domain
          Length = 1399

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 447 ELIIRQLFRKMSLALVLSSSNYYSQE*GYQKVLGWS 554
           E+I R+L  +  +AL LSS+NY+     Y+    WS
Sbjct: 572 EIIFRRLQEESKVALALSSANYFVLSILYRFFRQWS 607


>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 894

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 298 RILYWKPLVTPLIMFLHVNRLSSRRQAP 215
           R +YW+PL  P +  +H+ +    R+ P
Sbjct: 814 RSIYWQPLSFPCLKTIHITKCPELRKLP 841


>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 999

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 395 PSDVFLTQEVTYLNN*ITLSGDTVNGEVSIHSTHLVLEAFSYSFNHVS 252
           P +V +   + YL+    LS +  +GE+ +   +L L   + S+NH+S
Sbjct: 540 PKEVGILPVLNYLD----LSSNQFSGEIPLELQNLKLNVLNLSYNHLS 583


>At4g19570.1 68417.m02877 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI4
           DnaJ homolog subfamily B member 12 {Mus musculus};
           contains Pfam profile PF00226: DnaJ domain
          Length = 558

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 9   GQTKPKHEANCSKSESQNPRRAYGPCEIASGDS*RAPRSSQKE 137
           G  KPK  +    +ES  P  +YGP         R PR +  E
Sbjct: 141 GMQKPKRSSTPKPTESDKPASSYGPTPPPEPRPKRRPRPNIPE 183


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 228 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 133
           GGK L   + FLN L+E  ++HAN N+ V  VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 52  KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 162
           +VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,442
Number of Sequences: 28952
Number of extensions: 280220
Number of successful extensions: 710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)