Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00028
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04360.1 68417.m00623 hypothetical protein                          27   4.8  
At1g67190.1 68414.m07643 F-box family protein                          27   4.8  
At3g18650.1 68416.m02369 MADS-box family protein contains simila...    27   8.5  

>At4g04360.1 68417.m00623 hypothetical protein 
          Length = 125

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 105 RKTLKIQFGWLLYHCR 152
           R+   + FGW+L+HC+
Sbjct: 4   RRRFHVHFGWILFHCQ 19


>At1g67190.1 68414.m07643 F-box family protein
          Length = 419

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 171 NSSHMVFYNDITTNRIESL 115
           NS+   FY D+TTNR+E L
Sbjct: 46  NSADWPFYRDLTTNRLEIL 64


>At3g18650.1 68416.m02369 MADS-box family protein contains
           similarity to hypothetical proteins of [Arabidopsis
           thaliana]
          Length = 386

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 353 DGLRSLTFIRYVDNNGILKNRLSHW*FSFLTF 448
           +GL+S+    Y +NN I  N LSH    F T+
Sbjct: 334 NGLQSMNMHDYSNNNSINSNGLSHQYVQFPTY 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,441,477
Number of Sequences: 28952
Number of extensions: 171233
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)