Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00021
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19570.1 68414.m02437 dehydroascorbate reductase, putative si...    46   1e-05
At1g19550.1 68414.m02435 dehydroascorbate reductase, putative si...    45   3e-05
At5g36270.1 68418.m04375 dehydroascorbate reductase, putative si...    39   0.003
At5g16710.1 68418.m01956 dehydroascorbate reductase, putative St...    35   0.032
At1g59540.1 68414.m06694 kinesin motor protein-related similar t...    28   3.7  
At2g27035.1 68415.m03248 plastocyanin-like domain-containing pro...    28   4.9  
At4g12840.1 68417.m02012 expressed protein contains Pfam profile...    27   8.6  

>At1g19570.1 68414.m02437 dehydroascorbate reductase, putative
           similar to GB:BAA90672 from (Oryza sativa)
          Length = 213

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 24/97 (24%), Positives = 47/97 (48%)
 Frame = +2

Query: 209 SNREPVFKTEAGAGSQDEQKSAALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPKVQ 388
           SN    F T   +   ++    AL   L  ++  L+  +  F+ G+ +   D  L PK+ 
Sbjct: 100 SNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLY 159

Query: 389 HIRVGGKYFVDFQIPTTFRALWRYMYHMYQLDAFTQS 499
           H++V   +F  + +P +F  +  YM  ++ LD+F ++
Sbjct: 160 HLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKT 196


>At1g19550.1 68414.m02435 dehydroascorbate reductase, putative
           similar to dehydroascorbate reductase [Arabidopsis
           thaliana] gi|10952514|gb|AAG24946
          Length = 153

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 27/94 (28%), Positives = 44/94 (46%)
 Frame = +2

Query: 218 EPVFKTEAGAGSQDEQKSAALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPKVQHIR 397
           +P  KT A   S       AL  HL   DG        F+ G+ +   D  L PK+ H++
Sbjct: 50  DPPLKTPAEFASVGSNIFEALENHLKSHDG-------PFIAGERVSAVDLSLAPKLYHLQ 102

Query: 398 VGGKYFVDFQIPTTFRALWRYMYHMYQLDAFTQS 499
           V   +F  + +P +F  +  YM  ++ LD+F ++
Sbjct: 103 VALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKT 136


>At5g36270.1 68418.m04375 dehydroascorbate reductase, putative
           similar to dehydroascorbate reductase {Spinacia
           oleracea} gi:10952511 gb:AF195783, PMID:11148269
          Length = 217

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 20/75 (26%), Positives = 38/75 (50%)
 Frame = +2

Query: 275 ALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPKVQHIRVGGKYFVDFQIPTTFRALW 454
           AL   L  +D  L+     F+ GD +   D  L PK+ H+     +F+D+ +P +   + 
Sbjct: 126 ALLDELEALDHHLKTHVGPFVAGDKVTVVDLSLAPKLYHLETTLGHFMDWCVPESLTNVR 185

Query: 455 RYMYHMYQLDAFTQS 499
            YM  ++ L++F ++
Sbjct: 186 DYMKVLFSLESFEKT 200


>At5g16710.1 68418.m01956 dehydroascorbate reductase, putative
           Strong similarity to dehydroascorbate reductase
           [Spinacia oleracea] gi:10952512 gb:AAG24945
          Length = 258

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 12/56 (21%), Positives = 32/56 (57%)
 Frame = +2

Query: 332 FLTGDTMCCFDCELMPKVQHIRVGGKYFVDFQIPTTFRALWRYMYHMYQLDAFTQS 499
           F+ G+ +   D  L PK+ H+++   ++ ++ +P +   +  YM +++  ++FT +
Sbjct: 186 FINGEKISAADLSLAPKLYHMKIALGHYKNWSVPDSLPFVKSYMENVFSRESFTNT 241


>At1g59540.1 68414.m06694 kinesin motor protein-related similar to
           kinesin motor protein (kin2) GI:2062751 from (Ustilago
           maydis)
          Length = 823

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 269 SAALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPKVQHI 394
           S  LRAH+   D  L R     L G+   C  C + P+  HI
Sbjct: 268 STKLRAHIPYRDSKLTRILQPALGGNAKTCIICTIAPEEHHI 309


>At2g27035.1 68415.m03248 plastocyanin-like domain-containing
           protein low similarity to SP:P80728 Mavicyanin
           {Cucurbita pepo}; contains Pfam profile PF02298:
           Plastocyanin-like domain
          Length = 163

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 6   LKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGL 116
           LK + L +T   + +PPP   TNF +T  P++  N +
Sbjct: 115 LKGMKLAITV--LPQPPPSAPTNFTSTTTPLIPPNAI 149


>At4g12840.1 68417.m02012 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 413

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 413 FVDFQIPTTFRALWRYMYHMYQLD 484
           FV+   P   RA WR  +HM Q D
Sbjct: 274 FVEMMAPVFSRAAWRCTWHMIQND 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,470,558
Number of Sequences: 28952
Number of extensions: 222233
Number of successful extensions: 672
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)