Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0208.Seq
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    34   0.12 
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    32   0.50 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    32   0.50 
At1g09910.1 68414.m01115 expressed protein                             30   2.0  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    29   3.6  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    28   6.2  

>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +3

Query: 15  CLNSGWACSRRAQQCSTKAEHHKDKKCGCRIC*KAKENS--VLLPRCEPTK 161
           CL S W C   + + +   E    K+C C +C    EN    L   CEP K
Sbjct: 42  CLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDENKDPSLWLVCEPEK 92


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 506 RVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 357
           R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 831 REFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 506 RVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 357
           R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 831 REFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At1g09910.1 68414.m01115 expressed protein
          Length = 675

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 3   NHEVCLNSGWACSRRAQQCSTKAEHHKDKK 92
           NHE  LN+G  CS    Q ++   H KD +
Sbjct: 14  NHETALNAGHHCSEGTDQGTSGLSHRKDHR 43


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 94  VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLRCT 264
           V A+ +EK++K L    D S      E+ K  KD+D+E   +    K+ VE+  + T
Sbjct: 69  VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEKFT 124


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 160 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 255
           N +DEY K   DYD  + +D  T K+A  + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,523,832
Number of Sequences: 28952
Number of extensions: 306736
Number of successful extensions: 752
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)