Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0204.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19610.2 68415.m02291 zinc finger (C3HC4-type RING finger) fa...    31   0.89 
At2g19610.1 68415.m02290 zinc finger (C3HC4-type RING finger) fa...    31   0.89 
At5g66600.1 68418.m08395 expressed protein contains Pfam profile...    31   1.2  
At1g43000.1 68414.m04950 zinc-binding family protein similar to ...    30   2.0  
At5g06970.1 68418.m00789 expressed protein                             29   3.6  
At5g66590.1 68418.m08394 allergen V5/Tpx-1-related family protei...    29   4.7  
At3g22990.1 68416.m02899 expressed protein                             29   4.7  
At5g66560.1 68418.m08391 phototropic-responsive NPH3 family prot...    28   6.2  

>At2g19610.2 68415.m02291 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 418

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 380 SSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCI 511
           +S++   EG+T+   C  C   ++ N+K E+ +  FH  C  C+
Sbjct: 188 ASQTRWCEGDTEYESCPVCYAYVSPNDKFEV-QGCFHRICVTCM 230


>At2g19610.1 68415.m02290 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 397

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 380 SSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCI 511
           +S++   EG+T+   C  C   ++ N+K E+ +  FH  C  C+
Sbjct: 188 ASQTRWCEGDTEYESCPVCYAYVSPNDKFEV-QGCFHRICVTCM 230


>At5g66600.1 68418.m08395 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547; expression
           supported by MPSS
          Length = 614

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 547 CYGQVFCEPCFQHHVLHRHKDNPNEFLSSXAF 642
           C  +++C+      VLHR   +PN  LSS AF
Sbjct: 292 CMSEIYCKLAEPPSVLHRGLSSPNSSLSSSAF 323


>At1g43000.1 68414.m04950 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 216

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +1

Query: 499 CQVHFCHTVPSSNIHI--CYGQVFCEPCFQHHVLHR 600
           C +H   +    N+    C G  FC  C  HH  HR
Sbjct: 24  CSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHR 59


>At5g06970.1 68418.m00789 expressed protein
          Length = 1101

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 306 LSTQTGPSGLVESLEMVRRGIILEQAANQRPLKGILNA 419
           +S     SGLV  LEM+R  + + +A + R  +G+LNA
Sbjct: 245 VSQSQSSSGLVSLLEMMRGQMEISEAMDIRTRQGLLNA 282


>At5g66590.1 68418.m08394 allergen V5/Tpx-1-related family protein
           contains similarity to SP|Q41495 STS14 protein precursor
           {Solanum tuberosum}; contains Pfam profile PF00188:
           SCP-like extracellular protein
          Length = 185

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 285 RSSTCCLKHPCRIRARRTSSPPTELFCRRNTCSKFDESFALLFQWCLQNP 136
           +S TC   H C +  +       EL C + TC+K  ES  L    C  NP
Sbjct: 130 KSDTCAANHTCGVYKQVVWRNSKELGCAQATCTK--ESTVLTI--CFYNP 175


>At3g22990.1 68416.m02899 expressed protein
          Length = 460

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
 Frame = +2

Query: 401 EGNTKRSVCSRCLQMINENNKIEIDKQ---AFHSHCAKCIFATRFHRPTSTSAMVKSSAS 571
           EG +++ +C+     +  N     D +   A H HC + +F       T    +V +S  
Sbjct: 203 EGRSEKQMCAIAASNVIRNFSFMPDNEVVMAQHRHCLETVFQCIHDHMTEDEELVTNSLE 262

Query: 572 LASNITSCTDIR 607
              N+    D+R
Sbjct: 263 TIVNLAHLMDLR 274


>At5g66560.1 68418.m08391 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 668

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 395 ASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCIFATRFHRPTSTSAMVKSSASL 574
           ASE +T +     C   +  + +IE+D   FH H    +  +R      T    +SS+S+
Sbjct: 2   ASEKSTSKGQAWFCTTGLPSDIEIEVDDMTFHLHKFPLMSKSRKLHRLITEQETRSSSSM 61

Query: 575 A 577
           A
Sbjct: 62  A 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,065,069
Number of Sequences: 28952
Number of extensions: 356712
Number of successful extensions: 1017
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)