Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30196.Seq
(761 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 103 1e-22
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 103 1e-22
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 30 1.5
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b... 30 1.5
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 29 2.6
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ... 29 3.4
At5g25265.1 68418.m02995 expressed protein 29 4.5
At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat... 29 4.5
At3g08670.1 68416.m01007 expressed protein 29 4.5
At5g58410.1 68418.m07314 expressed protein contains similarity t... 28 5.9
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put... 28 5.9
At1g27960.1 68414.m03425 expressed protein contains Pfam profile... 28 5.9
At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putat... 28 7.8
At3g05370.1 68416.m00586 disease resistance family protein conta... 28 7.8
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 28 7.8
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 28 7.8
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 103 bits (247), Expect = 1e-22
Identities = 49/106 (46%), Positives = 71/106 (66%)
Frame = +1
Query: 187 AVRDVEDALTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 366
+V+ E + G + V + +L+R+ + VCFDVDSTV DEGIDELA+FCG G V
Sbjct: 55 SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114
Query: 367 RLTAEAMGGNMTFQEALKKRLDIIRPNVGXIREFIEKFPVRLTPGI 504
TA AMGG++ F+EAL RL + +P++ + E+++K P RL+PGI
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGI 160
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/59 (61%), Positives = 42/59 (71%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKFYFNGEYAGFDENEPT 686
LVK+L + VYL+SGGFR +I PVA L IP NIFAN L F +GE+ GFDENEPT
Sbjct: 163 LVKKLRANNIDVYLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPT 221
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 103 bits (247), Expect = 1e-22
Identities = 49/106 (46%), Positives = 71/106 (66%)
Frame = +1
Query: 187 AVRDVEDALTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVK 366
+V+ E + G + V + +L+R+ + VCFDVDSTV DEGIDELA+FCG G V
Sbjct: 55 SVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVA 114
Query: 367 RLTAEAMGGNMTFQEALKKRLDIIRPNVGXIREFIEKFPVRLTPGI 504
TA AMGG++ F+EAL RL + +P++ + E+++K P RL+PGI
Sbjct: 115 EWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGI 160
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/59 (61%), Positives = 42/59 (71%)
Frame = +3
Query: 510 LVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKFYFNGEYAGFDENEPT 686
LVK+L + VYL+SGGFR +I PVA L IP NIFAN L F +GE+ GFDENEPT
Sbjct: 163 LVKKLRANNIDVYLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPT 221
>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
identical to abscisic acid-insensitive protein 3
GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
Cell 4 (10), 1251-1261 (1992))
Length = 720
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 389 PIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSGQ 249
P S+ S ++SP P N SS SS STS A+L + G+
Sbjct: 80 PCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAASWAILRSDGE 126
>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
boundaries domain protein 13 (LBD13) identical to LOB
DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
Length = 268
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 392 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 270
PP LL+S P P S+PS M V S+S SA
Sbjct: 199 PPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSA 239
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -1
Query: 359 SSPFPQNLASSSMPSSCMTVESTSKQ--TQSAVLNNSGQSVGATSR*STPVRASSTSRTA 186
S P + + PS TV +T+ + S++ N+ Q +G++ STP S+ +
Sbjct: 444 SQPTTPSFGQPTTPSFRSTVSNTTSVFGSSSSLTTNTSQPLGSSIFGSTPAHGSTPGFSI 503
Query: 185 GCFSN 171
G F+N
Sbjct: 504 GGFNN 508
>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
mRNA binding protein precursor (GI:26453355)
[Lycopersicon esculentum]
Length = 406
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = -1
Query: 440 LMMSSLFFKASW-----NVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVES--TSKQ 282
L SSLFF + N+++PP SL +SS +L+SSS SS + S TS++
Sbjct: 4 LSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRTSRR 63
Query: 281 TQSAVLNNSGQSVG 240
SVG
Sbjct: 64 LSPQKFTVKASSVG 77
>At5g25265.1 68418.m02995 expressed protein
Length = 366
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 231 TLIDTSESVFNVAYCRLLFKL*RAISVASSPSNETIMIEFTSIL 100
T + S+SV+N CR+++ + I ++ P +E M FT IL
Sbjct: 72 TAVTASDSVYNTWQCRVMYYWFKKIQASAGPGSE--MGGFTRIL 113
>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -1
Query: 506 VIPGVSLTGNFSMNSLX*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASS 327
V+ G LT L T+ + +L++ +N++ PIA+ V L P + +
Sbjct: 839 VLMGNRLTQLLDAMELSRQTMKTVKQNLWWAFGYNIVRIPIAAGVLL----PLTGTMLTP 894
Query: 326 SMPSSCMTVESTSKQTQSAVL 264
SM + M V S T S +L
Sbjct: 895 SMAGALMGVSSLGVMTNSLLL 915
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 28.7 bits (61), Expect = 4.5
Identities = 31/102 (30%), Positives = 45/102 (44%)
Frame = -1
Query: 500 PGVSLTGNFSMNSLX*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSM 321
PG L GN S +SL P + S+ AS L S +S P + +
Sbjct: 105 PGTPL-GNDSHSSLAAPKIA--SSARASSASKASRLSVSQSESGYHSSRPARSSSVTRPS 161
Query: 320 PSSCMTVESTSKQTQSAVLNNSGQSVGATSR*STPVRASSTS 195
S+ TS ++ S++LN S SV + R S+P SS+S
Sbjct: 162 ISTSQYSSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSS 203
>At5g58410.1 68418.m07314 expressed protein contains similarity to
hypothetical proteins
Length = 1873
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 119 IIIVSLLGEEATEMALYSLKSNLQYATLKTLSLVSISVMSPQQTVRS 259
+I+V+ E + + +SLKS Q ATL T L SI ++ + + S
Sbjct: 831 VIVVAKFAAEVIDGSFFSLKSLSQDATLLTTVLSSIFIIDLENRMTS 877
>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 883
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 425 LFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVEST 291
L K + N LPP+ +A+ + T FPQ+ + S+ ++ T
Sbjct: 333 LELKRTQNSTLPPLLTAIEVFTVIDFPQSKTNEDDVSAIKNIKDT 377
>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 539
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 253 PELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGN 396
P T + D +V+QD+ I FCG+G E + A+ N
Sbjct: 12 PPTTTTGSFTGLNTDQSVLQDQDIVSSRPFCGQGTESFHIGADTPRSN 59
>At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -1
Query: 506 VIPGVSLTGNFSMNSLX*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASS 327
V+ G LT L T+ + +L++ +N++ PIA+ V L P + +
Sbjct: 839 VLMGNRLTQLLDAMELSRQTMKTVKQNLWWAFGYNIVGIPIAAGVLL----PLTGTMLTP 894
Query: 326 SMPSSCMTVESTSKQTQSAVL 264
SM + M V S T S +L
Sbjct: 895 SMAGALMGVSSLGVMTNSLLL 915
>At3g05370.1 68416.m00586 disease resistance family protein contains
leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2 disease resistance
protein GB:AAC15780 from [Lycopersicon pimpinellifolium]
Length = 860
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +1
Query: 211 LTGVDQRDVAPTDCPELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMG 390
LTG D D ++ P + + + F VDS I ++G++ K + ++V +
Sbjct: 622 LTGEDG-DFRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFS 680
Query: 391 GNMTFQEALKKRL 429
GN+ L K L
Sbjct: 681 GNIPESIGLLKEL 693
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 527 RKRSHRISSFGRIQESNRTGRGETKHPN-YQ 616
RK + I+SFGR + S GRG+T P+ YQ
Sbjct: 85 RKANCNIASFGRPRPSPPRGRGQTGSPSQYQ 115
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 527 RKRSHRISSFGRIQESNRTGRGETKHPN-YQ 616
RK + I+SFGR + S GRG+T P+ YQ
Sbjct: 85 RKANCNIASFGRPRPSPPRGRGQTGSPSQYQ 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,976
Number of Sequences: 28952
Number of extensions: 294570
Number of successful extensions: 894
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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