Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30190.Seq
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20640.2 68414.m02584 RWP-RK domain-containing protein simila...    29   3.7  
At1g20640.1 68414.m02583 RWP-RK domain-containing protein simila...    29   3.7  

>At1g20640.2 68414.m02584 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 844

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 693 WVSCSLLNSSGCKAIS*GTAHCFSDVKE 610
           WVSC   N SGC+       HC S + +
Sbjct: 308 WVSCQQQNKSGCRHNDENYIHCVSTIDD 335


>At1g20640.1 68414.m02583 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 844

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 693 WVSCSLLNSSGCKAIS*GTAHCFSDVKE 610
           WVSC   N SGC+       HC S + +
Sbjct: 308 WVSCQQQNKSGCRHNDENYIHCVSTIDD 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,548,341
Number of Sequences: 28952
Number of extensions: 289382
Number of successful extensions: 576
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)