Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30182.Seq
(827 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase fam... 48 8e-06
At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,... 46 4e-05
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ... 45 5e-05
At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol 3-phosphat... 36 0.043
At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol 3-phosphat... 34 0.13
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 30 2.2
At1g06100.1 68414.m00639 fatty acid desaturase family protein si... 30 2.2
At4g34350.1 68417.m04881 LytB family protein contains Pfam profi... 29 5.0
At1g06590.1 68414.m00698 expressed protein 29 5.0
At5g43860.1 68418.m05362 chlorophyllase (CLH2) identical to chlo... 28 8.7
At3g52640.2 68416.m05800 nicastrin-related contains weak similar... 28 8.7
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote... 28 8.7
>At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase family
protein similar to SP|Q07560 Cardiolipin synthetase (EC
2.7.8.-) {Saccharomyces cerevisiae; contains Pfam
profile PF01066: CDP-alcohol phosphatidyltransferase
Length = 341
Score = 48.0 bits (109), Expect = 8e-06
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = -2
Query: 505 QDLIPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTLSRYFDVTHATAQ-LAPTFISKV 332
+DL+ L +++ RD+ALV +R ++L +T S +F++ ++ Q + P FISKV
Sbjct: 221 KDLLHPGLVGIVLLRDVALVGGAVYLRALNLDWKWKTWSDFFNLDGSSPQKVEPLFISKV 280
Query: 331 NTAVQLLLVGTTLASPVFGYVD 266
NT QL LV + P FG D
Sbjct: 281 NTVFQLTLVAGAILQPEFGNPD 302
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = -3
Query: 645 LVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 511
L +G +D LDG++AR K S +GS+LDP+ADKVL+ + +++
Sbjct: 175 LAVSGASDWLDGYVARRMKINSV-VGSYLDPLADKVLIGCVAVAM 218
>At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,
putative similar to phosphatidylglycerolphosphate
synthase GI:13365519 from [Arabidopsis thaliana];
contains non-consensus CG acceptor splice site at exon 4
Length = 233
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = -3
Query: 648 LLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 511
+ + A ITD LDG+IAR + ++ G+FLDP+ADK++VA I L
Sbjct: 76 IFIAAAITDWLDGYIARKMR-LGSEFGAFLDPVADKLMVAATLILL 120
>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
(PGS1) identical to phosphatidylglycerolphosphate
synthase GI:13365519 from [Arabidopsis thaliana]
Length = 296
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -3
Query: 666 TTWHWGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 511
TT + + A ITD LDG++AR + S G+FLDP+ADK++VA I L
Sbjct: 134 TTATTSIFIAAAITDWLDGYLARKMRLGSA-FGAFLDPVADKLMVAATLILL 184
>At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol
3-phosphatidyltransferase / phosphatidylinositol
synthase (PIS1) identical to phosphatidylinositol
synthase (PIS1) GB:AJ000539 [gi:3367632]
Length = 227
Score = 35.5 bits (78), Expect = 0.043
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -3
Query: 648 LLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISLT 508
L F+ D +DGW+AR + ST G+ LD + D+V A L + L+
Sbjct: 47 LYFFSFCCDAVDGWVARRFNQVST-FGAVLDMVTDRVSTACLLVILS 92
>At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol
3-phosphatidyltransferase, putative /
phosphatidylinositol synthase, putative similar to
phosphatidylinositol synthase (PIS1) - Arabidopsis
thaliana, PID:e1313354 [gi:3367632]
Length = 225
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -3
Query: 648 LLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISLT 508
L F+ D +DGW AR + ST G+ LD + D+V A L + L+
Sbjct: 44 LYFFSFCCDAVDGWCARKFNQVST-FGAVLDMVTDRVSTACLLVILS 89
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 24 LIIYLHYFV*LIK*TVLLMVNKILKTIKNNLEMGIEIFHNTSRYSYFF 167
L++ +YFV + K L+M I T+ MGI+I H S S F
Sbjct: 536 LLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALF 583
>At1g06100.1 68414.m00639 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 347 SRCKLCGCVCYIEIPTQRSRWW*AYISNDKSSHN 448
S C +CG + T R+ WW A ++ +S HN
Sbjct: 214 SACHICGSQAWQTNDTSRNVWWLALLTMGESWHN 247
>At4g34350.1 68417.m04881 LytB family protein contains Pfam profile:
PF02401 LytB protein
Length = 466
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 802 KLKSRKDLGEVVGEENVLPLSQTTLGITRIAMSP 701
K+ + GE+V +EN LP T+G+T A +P
Sbjct: 410 KIAYKLHYGELVEKENFLPKGPITIGVTSGASTP 443
>At1g06590.1 68414.m00698 expressed protein
Length = 916
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 578 VD*PFQFLAIQPSSKSVIPANTNSPQCQVVIIPGLLHNPKYGRHCYSSDT 727
+D P + + Q ++ ++P + ++P + GLLHN K DT
Sbjct: 197 MDKPTEEIEFQKTASGIVPFHLHTPDSLMKATEGLLHNRKETSRTSKKDT 246
>At5g43860.1 68418.m05362 chlorophyllase (CLH2) identical to
chlorophyllase (CLH2) GI:6729677 from [Arabidopsis
thaliana]
Length = 318
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 727 LKWFGIVEGHFLPLQLPPNLS 789
+ W + HFLP Q+ PNLS
Sbjct: 110 MDWLSVGLNHFLPAQVTPNLS 130
>At3g52640.2 68416.m05800 nicastrin-related contains weak similarity
to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
sapiens]
Length = 705
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -1
Query: 329 HSCSTSIGR---HYAGVPSFWLC*SSSIKVLCGITAASTIVSAVSYLVSKD 186
HS S S R H+A + FW C +++I + AA+++V+ Y+++ D
Sbjct: 445 HSLSFSSFRSKPHFALLIPFWCCIAANIN-SSSVVAAASVVARTLYILASD 494
>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 2 GI:3360291 from [Zea
mays]
Length = 693
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 415 LPPPRTLSRYFDVTHATAQLAPTFISKVNTAVQLLL 308
L PP++LSR+ D+ Q+ P F ++ V+ L+
Sbjct: 632 LYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEALV 667
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,848,162
Number of Sequences: 28952
Number of extensions: 346157
Number of successful extensions: 686
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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