Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30181.Seq
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase fam...    35   0.027
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    30   0.78 
At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR...    28   2.4  

>At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase family
           protein similar to SP|Q07560 Cardiolipin synthetase (EC
           2.7.8.-) {Saccharomyces cerevisiae; contains Pfam
           profile PF01066: CDP-alcohol phosphatidyltransferase
          Length = 341

 Score = 34.7 bits (76), Expect = 0.027
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 382 YFDVTHATAQ-LAPTFISKVNTAVQLLLVGTTLASPVFGYVD 260
           +F++  ++ Q + P FISKVNT  QL LV   +  P FG  D
Sbjct: 261 FFNLDGSSPQKVEPLFISKVNTVFQLTLVAGAILQPEFGNPD 302


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 18  LIIYLHYFV*LIK*TVLLMVNKILKTIKNNLEMGIEIFHNTSRYSYFF 161
           L++  +YFV + K   L+M   I  T+     MGI+I H  S  S  F
Sbjct: 536 LLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALF 583


>At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 282 PQFLVMLIIRIESLVWNYCSL 220
           PQ LV L ++++ L WNYC L
Sbjct: 577 PQGLVYLPLKLKLLKWNYCPL 597


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,261,220
Number of Sequences: 28952
Number of extensions: 145766
Number of successful extensions: 279
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)