Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0069.Seq
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69870.1 68414.m08041 proton-dependent oligopeptide transport...    31   1.2  
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR...    28   8.7  
At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase fa...    28   8.7  

>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 620

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = -1

Query: 644 SVYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLTICHSPFRSQLLGRAIGAGLFAI 465
           S+ + D  G+ P+S +WL  +LI       FN I  +   +S F   +  R+I   LF++
Sbjct: 471 SINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHM--RSIANSLFSL 528

Query: 464 TPAG 453
           + AG
Sbjct: 529 SFAG 532


>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1085

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 80  HKINRMKLPTKSLITIRPTRRNLASLNIAAGELSEPYRELPNL 208
           HK+ ++K+     + + PT  NLASL +         R  P++
Sbjct: 675 HKLKKLKMSGCEKLRVIPTNINLASLEVVRMNYCSRLRRFPDI 717


>At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P70704], {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1213

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 172 TCGYIQTRQVTSRRSYCNERFSGQLHSVNFVSRCARIVKFHSHQF 38
           T G+IQ +  T R  YCN+R S Q   V F        K++   F
Sbjct: 24  TLGHIQPQAPTYRTVYCNDRESNQ--PVRFKGNSISTTKYNVFTF 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,365,951
Number of Sequences: 28952
Number of extensions: 361961
Number of successful extensions: 1086
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)