Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0057.Seq
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   151   3e-37
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   142   1e-34
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    36   0.020
At3g31310.1 68416.m03983 hypothetical protein                          30   1.3  
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ...    29   3.0  
At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transfera...    28   4.0  
At2g07725.1 68415.m00975 60S ribosomal protein L5 (RPL5) identic...    28   4.0  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   5.2  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   5.2  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  151 bits (366), Expect = 3e-37
 Identities = 65/83 (78%), Positives = 76/83 (91%)
 Frame = -1

Query: 502 QRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 323
           QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGK
Sbjct: 20  QRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGK 78

Query: 322 KVTAFVPRDGCLNHIEENDEVLV 254
           K+ AFVP DGCLN+IEENDEVL+
Sbjct: 79  KIAAFVPNDGCLNYIEENDEVLI 101



 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = -3

Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 132
           AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 102 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  142 bits (345), Expect = 1e-34
 Identities = 63/83 (75%), Positives = 73/83 (87%)
 Frame = -1

Query: 502 QRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 323
           QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGK
Sbjct: 20  QRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGK 78

Query: 322 KVTAFVPRDGCLNHIEENDEVLV 254
           K+ AFVP DGCLN+IEENDEVL+
Sbjct: 79  KIAAFVPNDGCLNYIEENDEVLI 101



 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = -3

Query: 254 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 132
           AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 102 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = -1

Query: 382 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVRDSVVKVTPSV 221
           K+PNSA RK  +V+L  N   + A +P +G  ++ +E+  VL+R   VK +P V
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRGGRVKDSPGV 93


>At3g31310.1 68416.m03983 hypothetical protein
          Length = 291

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 430 ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVR 251
           A  A   + E++    +  + AI K    +L+K   K  A V +D  +   + N  + +R
Sbjct: 220 ADTASHFLRERLVAAERARDEAISKAAEAKLVKEKTKEKAIVNKDNSVKLAQNNRAIGLR 279

Query: 250 DS-VVKVT 230
           DS V +VT
Sbjct: 280 DSEVARVT 287


>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 197 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALFI 81
           VV++  +SL   Y  KKE+  +  +++  D+L   A+F+
Sbjct: 80  VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118


>At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 488

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 560 KWVNPEEYERRVSXXXXXXXAMGGQRIQESPHGYEMEG*PFRWCISRKGHR-PRESW 393
           KW++ ++ +  +        +   +++ E   G +M G  F W ++RKG +  +E W
Sbjct: 280 KWLDSKKCDSVIYMAFGTMSSFKNEQLIEIAAGLDMSGHDFVWVVNRKGSQVEKEDW 336


>At2g07725.1 68415.m00975 60S ribosomal protein L5 (RPL5) identical
           to SP|P42793 Mitochondrial 60S ribosomal protein L5
           {Arabidopsis thaliana}
          Length = 185

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 535 NGA*AREPPREQRWADKEFKKAHMGTKWKANPFGGASHAKGIV 407
           NG  A E PR Q++   +  +   G  +++NPF G++  KG V
Sbjct: 48  NGKLAMEIPRGQKFIQTQ--RGSTGKSFRSNPFLGSNKDKGYV 88


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 496 WADKEFKKAHMGTKWKANPFGGASHAKG 413
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 496 WADKEFKKAHMGTKWKANPFGGASHAKG 413
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,699,833
Number of Sequences: 28952
Number of extensions: 294112
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)