Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0047.Seq
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    32   0.55 
At2g43930.1 68415.m05460 protein kinase family protein contains ...    29   3.9  

>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 203 PTSTLTEEHRDRILILNRRFLERRLTDDISANVSVSPRMRCTDSAAHKCN 54
           P +  +EE R+ +    +R L   L  D++A  ++SPR R +D++  KC+
Sbjct: 272 PIAEGSEERRNSVTESQKRKLIVNLDVDVAAITTLSPRQRLSDASDVKCS 321


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 300 EPRSYSIIPCTKYSSTFLARFEHSNLFKVKLSAHLDTHR 184
           EP    ++ C K S  F + FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,940,208
Number of Sequences: 28952
Number of extensions: 370847
Number of successful extensions: 771
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)