Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0021.Seq
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47790.1 68416.m05206 ABC transporter family protein contains...    27   6.8  
At1g60220.1 68414.m06782 Ulp1 protease family protein contains P...    27   6.8  

>At3g47790.1 68416.m05206 ABC transporter family protein contains
           Pfam domain, PF00005: ABC transporter
          Length = 901

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 119 KPILCAERENIQHCIMK 69
           KP +C ERE ++ C++K
Sbjct: 563 KPDVCREREKVEQCLLK 579


>At1g60220.1 68414.m06782 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 604

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 147 KYENYQISNFNTKILKL*VITSIDIPYDCHFFYT 248
           +Y    + NF  + L+  + +S  I  DCHFF T
Sbjct: 377 EYLTSPVMNFYMRFLQQQISSSNQISADCHFFNT 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,877,037
Number of Sequences: 28952
Number of extensions: 127937
Number of successful extensions: 219
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)