Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0018
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein...    44   6e-05
At5g11020.1 68418.m01287 protein kinase family protein contains ...    30   1.3  
At1g30130.2 68414.m03683 expressed protein similar to hypothetic...    27   7.1  
At1g30130.1 68414.m03682 expressed protein similar to hypothetic...    27   7.1  

>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 1080

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 20/43 (46%), Positives = 28/43 (65%)
 Frame = +2

Query: 107 MKTRFNTYDIICMITELQRLIGMRVNQVYDIDNRTYVIRLQRS 235
           +K R NT D+   +  L+RLIGMR + VYDI  +TY+ +L  S
Sbjct: 2   VKVRMNTADVAAEVKCLKRLIGMRCSNVYDISPKTYMFKLLNS 44



 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 253 VLESGNRFHTTQFEWPKNVAPSGFTMKV 336
           ++ESG R HTT +   K+  PSGFT+K+
Sbjct: 59  LMESGVRLHTTAYVRDKSNTPSGFTLKL 86


>At5g11020.1 68418.m01287 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 372

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 414 AMLSDTLKDGLSWIAVENVTILNDKTNLHGEP*GSDILWPLKLCCMKPVTR 262
           ++L  +  D   +I  E +  ++ +++LHG   GS I WP+++     VTR
Sbjct: 138 SLLGYSTNDTARFIVYELMPNVSLESHLHGSSQGSAITWPMRMKIALDVTR 188


>At1g30130.2 68414.m03683 expressed protein similar to hypothetical
           protein GI:1469227 from [Brassica oleracea]
          Length = 311

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 118 IQYIRYHMHDHR--TAKIDWNESKPGL*YRQSYVCDTFAAIRGEECFVLESGNRFHTTQF 291
           IQ+ RY    +R   AK D     PGL    S   + F  ++G+ C     G RF     
Sbjct: 247 IQHPRYSNPSYREEAAKRDQELRCPGLDGSDSDKTNKFDGLKGDGCSSSFGGCRFAWRDA 306

Query: 292 EWP 300
            WP
Sbjct: 307 NWP 309


>At1g30130.1 68414.m03682 expressed protein similar to hypothetical
           protein GI:1469227 from [Brassica oleracea]
          Length = 311

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 118 IQYIRYHMHDHR--TAKIDWNESKPGL*YRQSYVCDTFAAIRGEECFVLESGNRFHTTQF 291
           IQ+ RY    +R   AK D     PGL    S   + F  ++G+ C     G RF     
Sbjct: 247 IQHPRYSNPSYREEAAKRDQELRCPGLDGSDSDKTNKFDGLKGDGCSSSFGGCRFAWRDA 306

Query: 292 EWP 300
            WP
Sbjct: 307 NWP 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,590,301
Number of Sequences: 28952
Number of extensions: 253742
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)