Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0009
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65230.1 68414.m07395 expressed protein                             27   7.3  
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce...    27   9.7  

>At1g65230.1 68414.m07395 expressed protein
          Length = 286

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 126 NLYLKVGGAFTL*MSMGSSNHLTTSWDVSSSTHLSNKIYFFLS 254
           +L +KV   FTL    G       SWD+SSS+ ++ + YF+ S
Sbjct: 170 DLIVKVKSEFTLNQISGQVFEHEESWDLSSSSPIA-QAYFWTS 211


>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
           tryoni membrane transporter (white) gene, PID:g3676298
          Length = 577

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 360 FKLVFISKGFSFCANL*LPRNESK 431
           F L+ +S+ F+F A+L LP+N SK
Sbjct: 98  FPLLTVSETFTFSASLLLPKNLSK 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,043,820
Number of Sequences: 28952
Number of extensions: 175495
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)