Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0062.Seq
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04540.1 68415.m00460 3-oxoacyl-[acyl-carrier-protein] syntha...    27   9.9  
At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR ...    27   9.9  
At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family pr...    27   9.9  

>At2g04540.1 68415.m00460 3-oxoacyl-[acyl-carrier-protein] synthase
           II, putative similar to Swiss-Prot:P56902
           3-oxoacyl-[acyl-carrier-protein] synthase II (EC
           2.3.1.41) (Beta- ketoacyl-ACP synthase II) (KAS II)
           [Rhizobium meliloti]
          Length = 461

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 465 LRAH*SVARIIINNLIMTKNKYNSH 539
           LR H S +R+ +N  I T + Y+SH
Sbjct: 6   LRRHLSASRLRLNRFISTSSSYHSH 30


>At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 151 KDTKFIRTVRQTKIPSTTYNNKKKITLRNLLLHF--ALHV 38
           K+  FIR V+     STT N +     R L+LH   ALH+
Sbjct: 504 KEENFIRVVKVPTTTSTTINAQSPCRSRRLVLHSGNALHM 543


>At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 834

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 543 KGG*SVI*KLLVLQNRSCI**NITILYQT*HDSESH 650
           +GG   + KLL  +N  C+  ++++LY    DSE+H
Sbjct: 764 QGGIEPLVKLLEERNERCVEASLSVLYNLTMDSENH 799


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,023,353
Number of Sequences: 28952
Number of extensions: 230847
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)