Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0060.Seq
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25040.1 68416.m03129 ER lumen protein retaining receptor, pu...    28   6.1  
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    28   8.1  
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ...    28   8.1  

>At3g25040.1 68416.m03129 ER lumen protein retaining receptor,
           putative / HDEL receptor, putative similar to SP|P35402
           ER lumen protein retaining receptor (HDEL receptor)
           {Arabidopsis thaliana}; contains Pfam profile PF00810:
           ER lumen protein retaining receptor
          Length = 215

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 188 IHLKFIFLEIFYTNTLYSE 132
           IH KF FLE+ +T++LY E
Sbjct: 111 IHEKFTFLEVLWTSSLYLE 129


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
           (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 652 LRRCVNISTTLVPQNVQQAIDISRIGYFYRVSKF 551
           ++RCV I  + V  NVQ A+D+  +     VS F
Sbjct: 520 VKRCVGILVSGVSHNVQLAVDVVALSLKIAVSSF 553


>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
           contains Pfam domian PF00096: Zinc finger, C2H2 type
          Length = 302

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -1

Query: 80  TKYAFYVCNKTFNLLSRIQLYVY 12
           T+++  VCNKTFN  + +Q++++
Sbjct: 99  TQFSCSVCNKTFNRFNNMQMHMW 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,289
Number of Sequences: 28952
Number of extensions: 261780
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)