Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0055.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 42 4e-04
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 41 7e-04
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 41 7e-04
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 40 0.002
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 39 0.003
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 39 0.003
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 39 0.003
At2g44410.1 68415.m05523 expressed protein 39 0.003
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 39 0.003
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 38 0.005
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa... 37 0.011
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa... 37 0.015
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 37 0.015
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 37 0.015
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 37 0.015
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 37 0.015
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 36 0.034
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 36 0.034
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 36 0.034
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 36 0.034
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa... 35 0.045
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa... 35 0.045
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa... 35 0.045
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 35 0.045
At2g21380.1 68415.m02544 kinesin motor protein-related 35 0.045
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 35 0.060
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 35 0.060
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 35 0.060
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 35 0.060
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 35 0.060
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 34 0.079
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 34 0.10
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 33 0.14
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 33 0.14
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 33 0.14
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 33 0.18
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa... 33 0.18
At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger) fa... 33 0.18
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 33 0.24
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa... 33 0.24
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa... 33 0.24
At4g34370.1 68417.m04883 IBR domain-containing protein similar t... 32 0.32
At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger) fa... 32 0.32
At2g01150.1 68415.m00024 zinc finger (C3HC4-type RING finger) fa... 32 0.32
At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger) fa... 31 0.56
At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger) fa... 31 0.56
At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger) fa... 31 0.56
At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing... 31 0.56
At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger) fa... 31 0.73
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 31 0.97
At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger) fa... 31 0.97
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 31 0.97
At1g65430.1 68414.m07423 zinc finger protein-related contains we... 31 0.97
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f... 31 0.97
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 31 0.97
At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At5g57820.1 68418.m07231 hypothetical protein 29 2.2
At2g31760.1 68415.m03878 zinc finger protein-related contains lo... 29 2.2
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa... 29 2.2
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa... 29 2.2
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 29 2.2
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 29 2.2
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 29 2.2
At1g24440.1 68414.m03079 expressed protein similar to MTD2 [Medi... 29 2.2
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 29 3.0
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 29 3.0
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 29 3.9
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 29 3.9
At3g48030.1 68416.m05236 hypoxia-responsive family protein / zin... 29 3.9
At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger) fa... 29 3.9
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 29 3.9
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa... 29 3.9
At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) fa... 29 3.9
At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger) fa... 29 3.9
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 29 3.9
At5g01450.1 68418.m00058 expressed protein 28 5.2
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 28 5.2
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 28 5.2
At1g11120.1 68414.m01273 expressed protein 28 5.2
At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At3g48210.1 68416.m05260 expressed protein 28 6.8
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY... 27 9.0
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ... 27 9.0
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 27 9.0
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCV 236
C +CL QHPT CGHVFC+ C+
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCI 351
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVA 248
E CA+CL+ C P+ +CGH FC C++ A
Sbjct: 721 ELSCAICLEICFEPSTTTCGHSFCKKCLRSAA 752
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
C+ C + P L+CGHV+C CV +A ++E ++C
Sbjct: 192 CSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKC 228
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
++ C VCL+ P LSCGH+ CF CV
Sbjct: 23 QFLCCVCLELLYKPIVLSCGHLSCFWCV 50
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 141 SHNMEYD--CAVCLQKCQHPTKLSCGHVFCFLCVKGVA 248
S +EYD CA+CL+ +P L CGH+FC C A
Sbjct: 222 SIELEYDLTCAICLETVFNPYALKCGHIFCNSCACSAA 259
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 39.1 bits (87), Expect = 0.003
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAEN 263
++DC +CL + + P CGH+FC+ C+ + + N
Sbjct: 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNN 54
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 39.1 bits (87), Expect = 0.003
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCV 236
+DC +CL Q P CGH+FC+ C+
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLFCWPCI 72
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 39.1 bits (87), Expect = 0.003
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCV 236
+DC +CL Q P CGH+FC+ C+
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLFCWPCI 72
>At2g44410.1 68415.m05523 expressed protein
Length = 413
Score = 39.1 bits (87), Expect = 0.003
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLC 233
+DC +CL+K + P CGH+FC+ C
Sbjct: 123 FDCNICLEKAEDPILTCCGHLFCWGC 148
>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
[Homo sapiens] GI:899300; contains Pfam profiles
PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 335
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 111 CVLKHAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVA 248
C L +V + +++ C++CL P L+CGH++C++C A
Sbjct: 217 CELSDSVKV---DIDLTCSICLDTVFDPISLTCGHIYCYMCACSAA 259
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 38.3 bits (85), Expect = 0.005
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCV-KGVAHQAENVQC 272
+++C +C + Q P CGH+FC+ C+ + + H + + +C
Sbjct: 25 DFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQEC 65
>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 425
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
+DC +CL + P +CGH++C+ C+ +E +C
Sbjct: 139 FDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQVSEAKEC 177
>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 243
Score = 36.7 bits (81), Expect = 0.015
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCV 236
+DC +CL P CGH+FC+ C+
Sbjct: 42 FDCNICLDTAHDPVVTLCGHLFCWPCI 68
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 36.7 bits (81), Expect = 0.015
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 36.7 bits (81), Expect = 0.015
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 36.7 bits (81), Expect = 0.015
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 36.7 bits (81), Expect = 0.015
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 35.5 bits (78), Expect = 0.034
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCV 236
C +CL+ P SCGH+FCF C+
Sbjct: 245 CPICLEYPLCPQITSCGHIFCFPCI 269
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 35.5 bits (78), Expect = 0.034
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCV-KGVAHQAENVQCVAQKFL 290
+ C +CL+ + P CGH+FC+ C+ K + + +++ C K L
Sbjct: 17 FGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKAL 62
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 35.5 bits (78), Expect = 0.034
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCV 236
++C +CL Q P CGH+FC+ C+
Sbjct: 21 FECNICLDLAQDPIVTLCGHLFCWPCL 47
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 123 HAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
+A L+ + E +C +C + SC HVFC C+ G + V C
Sbjct: 566 NANLVDENKSEQECGLCHDPAEDYVVTSCAHVFCKACLIGFSASLGKVTC 615
>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.1 bits (77), Expect = 0.045
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCV 236
+DC +CL + P CGH++C+ C+
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCL 163
>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.1 bits (77), Expect = 0.045
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCV 236
+DC +CL + P CGH++C+ C+
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCL 163
>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.1 bits (77), Expect = 0.045
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGHVFCFLCV 236
+DC +CL + P CGH++C+ C+
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCL 163
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQCVA 278
C+VC + P CGHVFC+ CV V +N C A
Sbjct: 395 CSVCSDPPKDPVVTLCGHVFCYECV-SVNINGDNNTCPA 432
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 200 TILRSCFLFSLCEGCSSSSRKCAMCRTEIPLDYFENP 310
TIL C F LC+ CS + +C +CRT+I F P
Sbjct: 1021 TILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFP 1057
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 34.7 bits (76), Expect = 0.060
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQ 254
E C VC+ K + + CGH FC LC K + Q
Sbjct: 309 ELSCCVCMVKIKGASFTPCGHTFCKLCSKELMAQ 342
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 34.7 bits (76), Expect = 0.060
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 150 MEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQCV 275
+E C++C+Q + P CGH FC C + A + C+
Sbjct: 125 LEIFCSICIQLPERPVTTPCGHNFCLKCFEKWAVGQGKLTCM 166
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 239
E+ C +C + P C H FC C++
Sbjct: 495 EFSCQICRKVLSLPVTTPCAHNFCKACLE 523
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 34.7 bits (76), Expect = 0.060
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 150 MEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQCV 275
+E C++C+Q + P CGH FC C + A + C+
Sbjct: 125 LEIFCSICIQLPERPVTTPCGHNFCLKCFEKWAVGQGKLTCM 166
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 239
E+ C +C + P C H FC C++
Sbjct: 495 EFSCQICRKVLSLPVTTPCAHNFCKACLE 523
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 34.7 bits (76), Expect = 0.060
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 150 MEYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
+E C +CL+ P L C HVFC CV
Sbjct: 21 LELKCPLCLKLLNRPVLLPCDHVFCDSCV 49
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 34.7 bits (76), Expect = 0.060
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 150 MEYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
+E C +CL+ P L C HVFC CV
Sbjct: 21 LELKCPLCLKLLNRPVLLPCDHVFCDSCV 49
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 150 MEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQCV 275
+E C++C+Q + P CGH FC C + A + C+
Sbjct: 125 LEIFCSICIQLPERPITTPCGHNFCLKCFEKWAVGQGKLTCM 166
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 239
E+ C +C + P C H FC C++
Sbjct: 492 EFSCQICREVLSLPVTTPCAHNFCKACLE 520
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 33.9 bits (74), Expect = 0.10
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQCVAQ 281
C +C+Q + +CGH FC++C+ + C +Q
Sbjct: 52 CPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQ 91
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
E C +CL LSC HVFC C+
Sbjct: 348 ELKCPICLSLYNSAVSLSCNHVFCNACI 375
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK-GVAHQAENVQC 272
++ C +CL CGH+FC C+K ++ QA+ C
Sbjct: 124 KFSCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTC 164
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCV 236
C VC + P CGH+FC+ CV
Sbjct: 679 CCVCHDPPEDPVVTLCGHIFCYQCV 703
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 203 ILRSCFLFSLCEGCSSSSRKCAMCRTEIPLDYFENP 310
IL C F LC+ CS + +C +CRT+I F P
Sbjct: 1019 ILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFP 1054
>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAEN 263
E C VC+ + + + CGH FC LC + + Q N
Sbjct: 199 EISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGN 235
>At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 155
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 159 DCAVCLQKC---QHPTKLSCGHVFCFLCVKGVAHQ 254
DC VCL K + KL C HVF C++G HQ
Sbjct: 85 DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQ 119
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCV 236
CA+C +K P L C H+FC CV
Sbjct: 365 CAICQEKMHTPILLRCKHMFCEDCV 389
>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAEN 263
E C VC+ + + + CGH FC LC + + Q N
Sbjct: 214 ELGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGN 250
>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 304
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAEN 263
E C VC+ + + + CGH FC LC + + Q N
Sbjct: 253 ELGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGN 289
>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
melanogaster}; contains Pfam profile PF01485: IBR domain
Length = 597
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 138 FSHNMEYDCAVCLQKC--QHPTKLSCGHVFCFLC 233
F + + C VC++ H T++ CGH FC C
Sbjct: 115 FPQSSQMSCDVCMEDLPGDHMTRMDCGHCFCNNC 148
>At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger proteins
RHG1a [Arabidopsis thaliana] GI:3822225, RHY1a
[Arabidopsis thaliana] GI:3790593; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 202
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +3
Query: 141 SHNMEYD-CAVCLQKCQH-----PTKLSCGHVFCFLCV 236
S NME D C++CLQ PT++SC HVF C+
Sbjct: 145 SFNMETDSCSICLQSLVSSSKTGPTRMSCSHVFHSSCL 182
>At2g01150.1 68415.m00024 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 147
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 138 FSHNMEYDCAVCLQKC---QHPTKLSCGHVFCFLCVKG 242
+S N DC VCL K + KL C HVF C++G
Sbjct: 66 YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEG 103
>At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK-GVAHQAENVQC 272
++ C +C+ CGH+FC C+K ++ Q + C
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTC 185
>At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK-GVAHQAENVQC 272
++ C +C+ CGH+FC C+K ++ Q + C
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTC 185
>At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK-GVAHQAENVQC 272
++ C +C+ CGH+FC C+K ++ Q + C
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTC 185
>At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing
protein similar to SP|O00623 Peroxisome assembly protein
12 (Peroxin-12) (Peroxisome assembly factor-3) (PAF-3)
{Homo sapiens}; contains Pfam profile PF04757: Pex2 /
Pex12 amino terminal region
Length = 393
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLS-CGHVFCFLCV 236
CA+CLQK +P+ ++ G VFC+ CV
Sbjct: 339 CALCLQKRANPSVVTVSGFVFCYSCV 364
>At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger C3HC4 type (RING finger), PF02182: YDG/SRA
domain
Length = 465
Score = 31.1 bits (67), Expect = 0.73
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLC 233
+ +C++C Q P + CGH FC C
Sbjct: 106 DLNCSLCNQLPDRPVTILCGHNFCLKC 132
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 30.7 bits (66), Expect = 0.97
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +3
Query: 114 VLKHAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
+L+ V ++DC +C+ + C H+FC C+
Sbjct: 600 LLQKLVAALQDGEDFDCPICISPPTNIIITRCAHIFCRACI 640
>At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 472
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 102 DNLCVLKHAVLIFSHNMEYDCAVCLQKCQHPTKL----SCGHVFCFLCV 236
D L V + +I N +DCAVCL + + KL C H F C+
Sbjct: 114 DTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCI 162
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 30.7 bits (66), Expect = 0.97
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCV 236
C C + + P CGH+FC+ CV
Sbjct: 751 CYECNEPPEKPVVTLCGHIFCYECV 775
>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
similarity to zinc finger proteins and a Pfam:PF01485
IBR domain
Length = 567
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 102 DNLCVLKHAVLIFSHNMEYDCAVCLQKCQHPT--KLSCGHVFCFLCVKGVAHQAEN 263
D + +L+ V+ F + E DC +C + +CGH FC C +G A N
Sbjct: 108 DAVGLLEKPVVDFPTDGELDCGICFETFLSDKLHAAACGHPFCDSCWEGYITTAIN 163
>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger
(ZZ type) family protein contains Pfam profiles PF02135:
TAZ zinc finger, PF00569: Zinc finger, ZZ type
Length = 1706
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 164 CCLLAKMSTSNKTILRSCFLFSLCEGCSSSSRK 262
CC L M T N+ + C F LC+GC + +K
Sbjct: 1416 CCTL--MVTGNRWVCSQCKDFQLCDGCYEAEQK 1446
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 114 VLKHAVLIFSHNMEYDCAVCLQK--CQHPTKLSCGHVFCFLCVKG 242
+L+ V+ E+ C +C + +SCGH FC C G
Sbjct: 116 ILEGPVVTTPDGREFTCGICFDSYTLEEIVSVSCGHPFCATCWTG 160
>At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 272
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +3
Query: 162 CAVCLQKC---QHPTKLSCGHVFCFLCVK 239
C +C QK + +KL CGH F F C+K
Sbjct: 227 CVICQQKLKDNEEVSKLGCGHDFHFGCIK 255
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
C++C P +C H FC C + H EN C
Sbjct: 86 CSICQNPFLDPVVTNCNHYFCDKC--ALKHHTENDTC 120
>At5g57820.1 68418.m07231 hypothetical protein
Length = 161
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 174 LQKCQHPTKLSCGHVFCFLCVKGVAHQAEN 263
L Q LSCGHV+ F C++G +N
Sbjct: 119 LSGLQEACVLSCGHVYHFKCLRGTTLDIDN 148
>At2g31760.1 68415.m03878 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 514
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 183 CQHPT-KLSCGHVFCFLCVKGVA-HQAEN 263
C H T SCGH FC++C K + H A N
Sbjct: 291 CNHMTCSASCGHRFCWICGKSYSDHYACN 319
>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 159 DCAVCLQKCQHPT---KLSCGHVFCFLCVK 239
+C+VCL K Q + KL CGH+F C++
Sbjct: 102 ECSVCLSKFQGDSEINKLKCGHLFHKTCLE 131
>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 159 DCAVCLQKCQHPT---KLSCGHVFCFLCVK 239
+C+VCL K Q + KL CGH+F C++
Sbjct: 102 ECSVCLSKFQGDSEINKLKCGHLFHKTCLE 131
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 239
E+ C +C Q P C H FC C++
Sbjct: 512 EFKCQICQQVLTLPVTTPCAHNFCKACLE 540
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLC 233
C+ C+Q + P CGH C C
Sbjct: 146 CSFCMQLPERPVTKPCGHNACLKC 169
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 239
E+ C +C Q P C H FC C++
Sbjct: 515 EFKCQICQQVLTLPVTTPCAHNFCKACLE 543
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLC 233
C+ C+Q + P CGH C C
Sbjct: 146 CSFCMQLPERPVTKPCGHNACLKC 169
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 239
E+ C +C + +P C H FC C++
Sbjct: 525 EFKCQICQKVMTNPVTTPCAHNFCKACLE 553
>At1g24440.1 68414.m03079 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812
Length = 251
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAEN 263
E +C +CL+ C +C H C C + ++E+
Sbjct: 152 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSES 188
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLC 233
C VC+ + + + CGH FC +C
Sbjct: 166 CCVCMGRKKGAAFIPCGHTFCRVC 189
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 114 VLKHAVLIFSHNMEYDCAVCLQKCQHPTKL---SCGHVFCFLCVKG 242
+L+ V+ S + E C +C P K+ SCGH FC C G
Sbjct: 121 ILESHVVPPSDDSELTCGICFDSYP-PEKIASVSCGHPFCTTCWTG 165
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +3
Query: 150 MEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
+ + C +C + P C H FC C + H +N +C
Sbjct: 308 LPFACFICREPFLDPVVTKCKHYFCEHC--ALKHHTKNKKC 346
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +3
Query: 150 MEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
+ + C +C + P C H FC C + H +N +C
Sbjct: 308 LPFACFICREPFLDPVVTKCKHYFCEHC--ALKHHTKNKKC 346
>At3g48030.1 68416.m05236 hypoxia-responsive family protein / zinc
finger (C3HC4-type RING finger) family protein similar
to RING-H2 finger protein RHX1a [Arabidopsis thaliana]
GI:3790591; contains Pfam profiles PF00097: Zinc finger
C3HC4 type (RING finger), PF04588: Hypoxia induced
protein conserved region
Length = 349
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = +3
Query: 102 DNLCVLKHAVLIFSHNMEYDCAVCLQKCQHPTKLS----CGHVFCFLCV 236
D L V + + S +DCAVCL + KL C H F C+
Sbjct: 187 DALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCI 235
>At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type(RING finger)
Length = 358
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = +3
Query: 141 SHNMEYDCAVCLQKC-----QHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
S +E C++CL+ + KL CGH F C+ + +QC
Sbjct: 31 SSPVEVSCSICLESVLDDGTRSKAKLQCGHQFHLDCIGSAFNMKGAMQC 79
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 183 CQHPT-KLSCGHVFCFLCVK 239
C H T CGH FC++C+K
Sbjct: 300 CNHMTCSAPCGHEFCWICLK 319
>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
C +C+ + + P + CGHV C + N +C
Sbjct: 331 CVICVSRRRVPAFIPCGHVVCCRRCASTVERELNPKC 367
>At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 132
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +3
Query: 162 CAVCLQKCQHPTKL----SCGHVFCFLCVKGVAHQAEN 263
C +CL++ + ++ +CGHVF LC+ Q +N
Sbjct: 80 CPICLEEYEDDHQIRRLRNCGHVFHLLCIDSWLTQKQN 117
>At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 260
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 239
E +C +CL+ C +C H C C +
Sbjct: 159 EEECGICLETCTKMVLPNCCHSMCIKCYR 187
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +3
Query: 150 MEYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQC 272
+ + C +C + P C H FC C + H +N +C
Sbjct: 273 LPFACFICREPFVDPVVTKCKHYFCEHC--ALKHHTKNKKC 311
>At5g01450.1 68418.m00058 expressed protein
Length = 444
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 156 YDCAVCLQKCQHPTKLSCGH-VFCFLCVKGVA 248
Y CA+C + LSCGH V CF C +A
Sbjct: 391 YLCAICYDAPRDCFFLSCGHCVACFQCGTRIA 422
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVK 239
C +C ++ + KL CGH+F C++
Sbjct: 292 CIICREEMTNAKKLICGHLFHVHCLR 317
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +3
Query: 153 EYDCAVCLQKCQH----PTKLSCGHVFCFLCVKGVAHQ-AENVQCVA 278
E +C VCLQ P L+CGH C C+ + + + ++C A
Sbjct: 3 EPECPVCLQSYDGESTVPRVLACGHTACEECLTNLPKKFPDTIRCPA 49
>At1g11120.1 68414.m01273 expressed protein
Length = 367
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/85 (23%), Positives = 42/85 (49%)
Frame = +3
Query: 441 PSIMENQSVLYYWLGLCTLLTSNNDSIP*K*SYSRRRVQRNTHRLPAKGIAGIRTNINQV 620
PS+++ ++V+ L TLLTS+ND+ + + ++Q + P + + +
Sbjct: 128 PSVIDEETVVKEVLSETTLLTSSNDNSTVE-KTTLTKIQEEEEKKPGIVVDVAQEPVLTK 186
Query: 621 PIEIKDETEDNVNENHDNAETEIII 695
P ++ E V+EN +E+ + I
Sbjct: 187 PSLVEPEKGSEVSENCSLSESLLSI 211
>At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger)
family protein contains similarity to autocrine motility
factor receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 577
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +3
Query: 123 HAVLIFSHNME---YD--CAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAEN 263
HA L+ + + E YD CA+C + +L C H+F C++ Q N
Sbjct: 319 HAALLDATSEELRDYDDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLN 370
>At3g48210.1 68416.m05260 expressed protein
Length = 315
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -3
Query: 585 LWQVTGGYSFAPAAASMITSTELSHCW-KSTMYKVPASSKVHSDSPLLKAFSNSELLRSS 409
L Q T S + A S T T +S K + +V K S+SPLL S S RSS
Sbjct: 250 LQQETSAISASAPAISFSTDTNMSTPENKRSKVQVNRRQKRGSESPLLAPVSTSATRRSS 309
Query: 408 YF 403
F
Sbjct: 310 RF 311
>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKGV 245
C VC+ + + + CGH +C +C + +
Sbjct: 156 CCVCMGREKGAAFIPCGHTYCRVCSREI 183
>At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 159 DCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAEN 263
+CA+C + +L C H+F C++ Q N
Sbjct: 336 ECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLN 370
>At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 159 DCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAEN 263
+CA+C + +L C H+F C++ Q N
Sbjct: 336 ECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLN 370
>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 532
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = +3
Query: 108 LCVLKHAVLIFSHNMEYD-----CAVCLQKCQHPTKLS--CGHVFCFLCVK 239
L + + AV I S N++ D C++C + Q LS C H FC C+K
Sbjct: 184 LSLAQVAVGIVSSNLDGDKPIENCSICCEDRQSEMMLSLKCTHKFCSHCMK 234
>At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY1)
similar to Ara4-interacting protein [Arabidopsis
thaliana] GI:13160609; contains Pfam profiles PF00789:
UBX domain, PF02809: Ubiquitin interaction motif
Length = 564
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 477 SSKVHSDSPLLKAFSNSELLRSSYFHQPFLPS*YHWNPSTPS 352
SS+ H ++ +L+A + + Y H PFLP P PS
Sbjct: 353 SSEEHDEAVMLEAAMFGGIPETGYNHLPFLPPQPRAQPRPPS 394
>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +3
Query: 186 QHPTKLS--CGHVFCFLCVKGV 245
QHP KL+ CG C LC+ G+
Sbjct: 66 QHPLKLNLKCGRFCCSLCISGL 87
>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 438
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVF-CFLCVKGV 245
CA+CL + CGHV C C+K +
Sbjct: 387 CAICLDAPSEAVCVPCGHVAGCMSCLKEI 415
>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 462
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVF-CFLCVKGV 245
CA+CL + CGHV C C+K +
Sbjct: 411 CAICLDAPSEAVCVPCGHVAGCMSCLKEI 439
>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 278
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 162 CAVCLQKCQHPTKL-SCGHVFCFLCVK 239
C +CL + + L +C H FCF C+K
Sbjct: 22 CPICLGQFLRESYLDTCFHKFCFNCIK 48
>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
domain
Length = 537
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 114 VLKHAVL-IFSHNMEYDCAVCLQKCQHP--TKLSCGHVFCFLCVKG 242
+LK V+ + ++ C +C + ++SCGH +C C G
Sbjct: 122 ILKEPVVDVNGTEVDIQCGICFESYTRKEIARVSCGHPYCKTCWTG 167
>At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 466
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 203 ILRSCFLFSLCEGCSSSSRKCAMCRTEI 286
+L C LC CS +KC CR I
Sbjct: 430 VLLPCRHRVLCRNCSDKCKKCPFCRITI 457
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVK 239
C +C ++ KL CGH+F C++
Sbjct: 113 CIICREEMTSAKKLVCGHLFHVHCLR 138
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVK 239
C +C ++ KL CGH+F C++
Sbjct: 221 CIICREEMTSAKKLVCGHLFHVHCLR 246
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1287
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCV 236
C +C + CGHVFC C+
Sbjct: 993 CGICNDAPEDAVASVCGHVFCKQCI 1017
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,823
Number of Sequences: 28952
Number of extensions: 320695
Number of successful extensions: 1181
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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