Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0053.Seq
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50390.1 68416.m05512 transducin family protein / WD-40 repea...    29   2.7  
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ...    28   4.7  
At5g13140.1 68418.m01505 expressed protein                             28   6.2  
At3g18710.1 68416.m02376 U-box domain-containing protein similar...    28   6.2  

>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to myosin heavy chain kinase B (gb:U90946)
           [Dictyostelium discoideum]
          Length = 469

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 528 GGGIHVVTSMSSGNPDATKICYKAARD-ESVSAQRR 424
           GGG HV  S+ +G+    K C    RD ESVS +RR
Sbjct: 373 GGGEHVCLSVLTGHAGPVK-CLAVERDQESVSGERR 407


>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 602

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 404 TRGSAARPSTSPVEGTSVSQRCRRTSRCRYLQYLVLSTGGY 282
           T  S++ P      G +  + C+R SRCR   YL+    GY
Sbjct: 52  THTSSSHPLVWCNNGENKDKYCKRESRCRVCSYLLDDDIGY 92


>At5g13140.1 68418.m01505 expressed protein
          Length = 267

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 400 AGQLLGQVLARSRGRQSPSG-VAARVAVDIYNISYCQRGDINS 275
           A  L  Q L R RGR SP G +     + +  + YC    IN+
Sbjct: 12  ASCLTHQALGRGRGRPSPEGSLDPSSRITVVGVVYCDTCSINT 54


>At3g18710.1 68416.m02376 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 415

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 266 LHSRVYIPPLTVRDIVNIYSDSCG 337
           L ++ ++P LT++ ++NI+SDS G
Sbjct: 60  LKTKDFVPNLTLQRLINIWSDSIG 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,162,265
Number of Sequences: 28952
Number of extensions: 228038
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)