Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0033.Seq
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40600.1 68415.m05008 appr-1-p processing enzyme family prote...    44   6e-05
At5g59650.1 68418.m07479 leucine-rich repeat protein kinase, put...    31   0.61 
At5g15030.1 68418.m01762 paired amphipathic helix repeat-contain...    29   2.4  
At4g30790.1 68417.m04362 expressed protein                             29   3.2  
At1g19320.1 68414.m02402 pathogenesis-related thaumatin family p...    29   3.2  
At1g79430.2 68414.m09257 myb family transcription factor-related       28   5.7  

>At2g40600.1 68415.m05008 appr-1-p processing enzyme family protein
           contains Pfam domain PF01661: Appr-1-p processing enzyme
           family
          Length = 257

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 4/38 (10%)
 Frame = +3

Query: 510 VQGDITKLAVD----VIVNAANPSLMGSGGVDGAIHRA 611
           ++GDITK +VD     IVN AN  ++G GG DGAIHRA
Sbjct: 85  LKGDITKWSVDSSSDAIVNPANERMLGGGGADGAIHRA 122


>At5g59650.1 68418.m07479 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 892

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 101 KKGLNIYSISSMISHP*GLDWPPESPDNQYHL 6
           KK L   +  S  S P  + WPP++P +QY+L
Sbjct: 245 KKALAAAATPSNASAPLTISWPPDNPGDQYYL 276


>At5g15030.1 68418.m01762 paired amphipathic helix repeat-containing
           protein low similarity to transcriptional repressor
           SIN3B [Mus musculus] GI:2921547; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 271

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 198 GTGM*RQHPVITRRNELPTNGSIPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKK 365
           G+G   QHPV + RNEL      PG   +  AL + +   A +  +K  + D++ K
Sbjct: 160 GSGSQNQHPVGSPRNELQGQSPKPGNGNTKDALTTDDAL-AYLKEIKDVFHDQKYK 214


>At4g30790.1 68417.m04362 expressed protein
          Length = 1148

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 324 IASVKVQYLDKQKKLAVMNIEYN*VSEQLTLLSRKMRFNQK 446
           I  ++ + ++K  KL+ M  + N   E+++ LSR++  NQK
Sbjct: 814 ILELRNELMEKSNKLSEMESKLNGAMEEVSNLSRELETNQK 854


>At1g19320.1 68414.m02402 pathogenesis-related thaumatin family
           protein similar to SP:P28493 Pathogenesis-related
           protein 5 precursor (PR-5) from [Arabidopsis thaliana],
           thaumatin-like protein [Arabidopsis thaliana]
           GI:2435406; contains Pfam profile PF00314: Thaumatin
           family
          Length = 247

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 236 TGDDWVLTSHAGSTIWP 186
           +G  + LT+H GSTIWP
Sbjct: 24  SGTTFTLTNHCGSTIWP 40


>At1g79430.2 68414.m09257 myb family transcription factor-related
          Length = 358

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 462 KKPEGVRRRYENAYSCVQGD 521
           KKP  +   YEN   CVQGD
Sbjct: 5   KKPSSMNGSYENRAMCVQGD 24


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,557,130
Number of Sequences: 28952
Number of extensions: 280615
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)