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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0032.Seq
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    77   1e-14
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein...    70   2e-12
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein...    70   2e-12
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ...    69   2e-12
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ...    69   2e-12
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ...    69   2e-12
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ...    69   2e-12
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein...    68   7e-12
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein...    66   3e-11
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein...    66   3e-11
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein...    66   3e-11
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ...    64   7e-11
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ...    64   1e-10
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to...    63   2e-10
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ...    61   6e-10
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ...    60   1e-09
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ...    59   3e-09
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ...    56   2e-08
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ...    54   7e-08
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t...    54   1e-07
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ...    53   2e-07
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ...    52   3e-07
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ...    52   3e-07
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ...    52   5e-07
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    52   5e-07
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    52   5e-07
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ...    52   5e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)...    51   7e-07
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)...    51   7e-07
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ...    50   1e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t...    50   2e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP...    50   2e-06
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP...    50   2e-06
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP...    50   2e-06
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP...    50   2e-06
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ...    50   2e-06
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ...    50   2e-06
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ...    50   2e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat...    49   3e-06
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    49   3e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    49   4e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat...    49   4e-06
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...    48   5e-06
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s...    48   6e-06
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ...    48   8e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t...    48   8e-06
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ...    48   8e-06
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              47   1e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat...    47   1e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat...    47   1e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ...    47   1e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila...    47   1e-05
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t...    46   2e-05
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ...    46   2e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ...    46   3e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)...    46   3e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t...    46   3e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto...    46   3e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga...    45   4e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga...    45   4e-05
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ...    45   6e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)...    45   6e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)...    45   6e-05
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi...    45   6e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    44   8e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ...    44   8e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33...    44   8e-05
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ...    44   1e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ...    44   1e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    44   1e-04
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ...    44   1e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ...    43   2e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat...    43   2e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila...    43   2e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila...    43   2e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit...    43   2e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit...    43   2e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit...    43   2e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    43   2e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ...    43   2e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /...    42   3e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    42   3e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative...    42   3e-04
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    42   3e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat...    42   3e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat...    42   3e-04
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative      42   4e-04
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ...    42   5e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    42   5e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    41   7e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ...    41   7e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ...    41   7e-04
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    41   7e-04
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ...    41   0.001
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ...    41   0.001
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    41   0.001
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    40   0.001
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ...    40   0.001
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    40   0.001
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative...    40   0.001
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)       40   0.001
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ...    40   0.002
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t...    40   0.002
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t...    40   0.002
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ...    40   0.002
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ...    40   0.002
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ...    40   0.002
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    40   0.002
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC...    39   0.003
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC...    39   0.003
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ...    39   0.003
At5g06000.1 68418.m00665 eukaryotic translation initiation facto...    39   0.003
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ...    39   0.003
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k...    39   0.003
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ...    39   0.003
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28...    39   0.004
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t...    39   0.004
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu...    39   0.004
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ...    38   0.005
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative...    38   0.005
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ...    38   0.005
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    38   0.005
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    38   0.005
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr...    38   0.007
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative...    38   0.009
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t...    38   0.009
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ...    38   0.009
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea...    38   0.009
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea...    38   0.009
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative...    37   0.012
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ...    37   0.012
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    37   0.012
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    37   0.015
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ...    37   0.015
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative...    36   0.020
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ...    36   0.020
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ...    36   0.020
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ...    36   0.020
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    36   0.020
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    36   0.020
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ...    36   0.027
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide...    36   0.035
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide...    36   0.035
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide...    36   0.035
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    35   0.047
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ...    35   0.062
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ...    35   0.062
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    35   0.062
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR...    35   0.062
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    34   0.082
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ...    34   0.082
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (...    34   0.082
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ...    34   0.082
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative...    34   0.082
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ...    34   0.11 
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t...    34   0.11 
At2g47310.1 68415.m05906 flowering time control protein-related ...    34   0.11 
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr...    33   0.14 
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr...    33   0.14 
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    33   0.14 
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...    33   0.14 
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    33   0.14 
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ...    33   0.19 
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    33   0.19 
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ...    33   0.19 
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ...    33   0.25 
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ...    33   0.25 
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ...    32   0.33 
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ...    32   0.33 
At5g04290.1 68418.m00422 KOW domain-containing transcription fac...    32   0.44 
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ...    32   0.44 
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ...    31   0.58 
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ...    31   0.58 
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    31   0.58 
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ...    31   0.76 
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ...    31   0.76 
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ...    31   0.76 
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ...    30   1.3  
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu...    30   1.3  
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ...    30   1.8  
At1g75550.1 68414.m08780 glycine-rich protein                          30   1.8  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   2.3  
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ...    29   2.3  
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil...    29   2.3  
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    29   2.3  
At1g65440.1 68414.m07424 glycine-rich protein                          29   2.3  
At5g13655.1 68418.m01588 hypothetical protein                          29   3.1  
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu...    29   3.1  
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu...    29   3.1  
At1g72800.1 68414.m08416 nuM1-related contains similarity with n...    29   3.1  
At1g41855.1 68414.m04833 hypothetical protein                          29   3.1  
At4g38440.1 68417.m05432 expressed protein                             29   4.1  
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    29   4.1  
At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...    28   5.4  
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ...    28   5.4  
At2g15770.1 68415.m01808 glycine-rich protein contains a domain ...    28   7.1  
At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to SP...    27   9.4  
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...    27   9.4  

>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 36/73 (49%), Positives = 51/73 (69%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           D +E  LREYFS FG ++ V+V+ +K TG+ RGFGFV F D   +DRV LQ  H I ++ 
Sbjct: 16  DTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV-LQDKHHIDNRD 74

Query: 441 LDVKKAISKTDMS 479
           +DVK+A+S+ + S
Sbjct: 75  VDVKRAMSREEQS 87



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 26/65 (40%), Positives = 43/65 (66%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L+E++  +GE++ V VM++  T R +GFGF+ +S   ++D    ++ H ID R V+ KRA
Sbjct: 22  LREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK-HHIDNRDVDVKRA 80

Query: 187 VPREE 201
           + REE
Sbjct: 81  MSREE 85



 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 24/68 (35%), Positives = 40/68 (58%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
           +  ++ R YF T+G +    ++ D+ T + RGFGFV FD  D VD V  +  H +  + +
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180

Query: 444 DVKKAISK 467
           +VK+A+ K
Sbjct: 181 EVKRALPK 188



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 22/63 (34%), Positives = 40/63 (63%)
 Frame = +1

Query: 10  KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
           + ++E +G + D V+M D  T+R +GFGF+++     VD   +   H ++G+ VE KRA+
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRAL 186

Query: 190 PRE 198
           P++
Sbjct: 187 PKD 189


>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 495

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 33/74 (44%), Positives = 46/74 (62%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           S  K ++EQ+G   DVVVM D  T+R +GFGFITY     V++      H+++G++VE K
Sbjct: 122 SDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181

Query: 181 RAVPREEIKRPEAS 222
           RAVP+E    P  S
Sbjct: 182 RAVPKELSPGPSRS 195



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 28/65 (43%), Positives = 45/65 (69%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           LKE++  +GE+++ V++KD  T R++GFGF+ ++    V E      H IDGR+VE K+A
Sbjct: 22  LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKA 80

Query: 187 VPREE 201
           VPR++
Sbjct: 81  VPRDD 85



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 28/73 (38%), Positives = 45/73 (61%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           D  EE L+EYFS+FG ++   ++ D+ TG+ RGFGFV F D   V  + + + H I  + 
Sbjct: 16  DTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD-PAVAEIVITEKHNIDGRL 74

Query: 441 LDVKKAISKTDMS 479
           ++ KKA+ + D +
Sbjct: 75  VEAKKAVPRDDQN 87



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 25/78 (32%), Positives = 43/78 (55%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+        + E D + YF  FG    V V+ D  T + RGFGF+ +D  + V++V L+
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168

Query: 414 QNHQIKDQHLDVKKAISK 467
             H++  + ++VK+A+ K
Sbjct: 169 TFHELNGKMVEVKRAVPK 186


>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 494

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 33/74 (44%), Positives = 46/74 (62%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           S  K ++EQ+G   DVVVM D  T+R +GFGFITY     V++      H+++G++VE K
Sbjct: 122 SDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181

Query: 181 RAVPREEIKRPEAS 222
           RAVP+E    P  S
Sbjct: 182 RAVPKELSPGPSRS 195



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 28/65 (43%), Positives = 45/65 (69%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           LKE++  +GE+++ V++KD  T R++GFGF+ ++    V E      H IDGR+VE K+A
Sbjct: 22  LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKA 80

Query: 187 VPREE 201
           VPR++
Sbjct: 81  VPRDD 85



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 28/73 (38%), Positives = 45/73 (61%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           D  EE L+EYFS+FG ++   ++ D+ TG+ RGFGFV F D   V  + + + H I  + 
Sbjct: 16  DTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD-PAVAEIVITEKHNIDGRL 74

Query: 441 LDVKKAISKTDMS 479
           ++ KKA+ + D +
Sbjct: 75  VEAKKAVPRDDQN 87



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 25/78 (32%), Positives = 43/78 (55%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+        + E D + YF  FG    V V+ D  T + RGFGF+ +D  + V++V L+
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168

Query: 414 QNHQIKDQHLDVKKAISK 467
             H++  + ++VK+A+ K
Sbjct: 169 TFHELNGKMVEVKRAVPK 186


>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/63 (47%), Positives = 44/63 (69%)
 Frame = +1

Query: 10  KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
           K +++Q+G I DVVVM D  T+R +GFGFIT+     VD   +   H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186

Query: 190 PRE 198
           P+E
Sbjct: 187 PKE 189



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 30/78 (38%), Positives = 44/78 (56%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+        I EE+ + YF  FG I  V V+ D  T + RGFGF+ FD  D VDRV  +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170

Query: 414 QNHQIKDQHLDVKKAISK 467
             H++  + ++VK+A+ K
Sbjct: 171 TFHELNGKLVEVKRAVPK 188



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/71 (39%), Positives = 45/71 (63%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           D +EE LR+YFS +G++V   ++ D+ TG+ RGFGF+ F D    +RV +   H I  + 
Sbjct: 16  DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-IMDKHIIDGRT 74

Query: 441 LDVKKAISKTD 473
           ++ KKA+ + D
Sbjct: 75  VEAKKAVPRDD 85



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 27/65 (41%), Positives = 44/65 (67%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L++++  +G++V+ V+M+D  T R++GFGFI ++    V E      H IDGR VE K+A
Sbjct: 22  LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80

Query: 187 VPREE 201
           VPR++
Sbjct: 81  VPRDD 85


>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/63 (47%), Positives = 44/63 (69%)
 Frame = +1

Query: 10  KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
           K +++Q+G I DVVVM D  T+R +GFGFIT+     VD   +   H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186

Query: 190 PRE 198
           P+E
Sbjct: 187 PKE 189



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 30/78 (38%), Positives = 44/78 (56%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+        I EE+ + YF  FG I  V V+ D  T + RGFGF+ FD  D VDRV  +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170

Query: 414 QNHQIKDQHLDVKKAISK 467
             H++  + ++VK+A+ K
Sbjct: 171 TFHELNGKLVEVKRAVPK 188



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/71 (39%), Positives = 45/71 (63%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           D +EE LR+YFS +G++V   ++ D+ TG+ RGFGF+ F D    +RV +   H I  + 
Sbjct: 16  DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-IMDKHIIDGRT 74

Query: 441 LDVKKAISKTD 473
           ++ KKA+ + D
Sbjct: 75  VEAKKAVPRDD 85



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 27/65 (41%), Positives = 44/65 (67%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L++++  +G++V+ V+M+D  T R++GFGFI ++    V E      H IDGR VE K+A
Sbjct: 22  LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80

Query: 187 VPREE 201
           VPR++
Sbjct: 81  VPRDD 85


>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 448

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/63 (47%), Positives = 44/63 (69%)
 Frame = +1

Query: 10  KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
           K +++Q+G I DVVVM D  T+R +GFGFIT+     VD   +   H+++G++VE KRAV
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186

Query: 190 PRE 198
           P+E
Sbjct: 187 PKE 189



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 30/78 (38%), Positives = 44/78 (56%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+        I EE+ + YF  FG I  V V+ D  T + RGFGF+ FD  D VDRV  +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170

Query: 414 QNHQIKDQHLDVKKAISK 467
             H++  + ++VK+A+ K
Sbjct: 171 TFHELNGKLVEVKRAVPK 188



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/71 (39%), Positives = 45/71 (63%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           D +EE LR+YFS +G++V   ++ D+ TG+ RGFGF+ F D    +RV +   H I  + 
Sbjct: 16  DTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV-IMDKHIIDGRT 74

Query: 441 LDVKKAISKTD 473
           ++ KKA+ + D
Sbjct: 75  VEAKKAVPRDD 85



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 27/65 (41%), Positives = 44/65 (67%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L++++  +G++V+ V+M+D  T R++GFGFI ++    V E      H IDGR VE K+A
Sbjct: 22  LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKA 80

Query: 187 VPREE 201
           VPR++
Sbjct: 81  VPRDD 85


>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 455

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/66 (45%), Positives = 45/66 (68%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           +  K +++Q+G I DVVVM D  T+R +GFGFIT+     VD   +   H+++G++VE K
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195

Query: 181 RAVPRE 198
           RAVP+E
Sbjct: 196 RAVPKE 201



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/65 (40%), Positives = 47/65 (72%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L+E++ ++G++V+ V+M+D  T R++GFGFI ++   + +    ++ H IDGR VE K+A
Sbjct: 31  LQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK-HIIDGRTVEAKKA 89

Query: 187 VPREE 201
           VPR++
Sbjct: 90  VPRDD 94



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 27/71 (38%), Positives = 44/71 (61%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           D +EE L+EYF  +G++V   ++ D+ TG+ RGFGF+ F D    +RV +   H I  + 
Sbjct: 25  DTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV-IMDKHIIDGRT 83

Query: 441 LDVKKAISKTD 473
           ++ KKA+ + D
Sbjct: 84  VEAKKAVPRDD 94



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 27/78 (34%), Positives = 42/78 (53%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+        I E + + YF  FG I  V V+ D  T + RGFGF+ FD  + VD V  +
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182

Query: 414 QNHQIKDQHLDVKKAISK 467
             H++  + ++VK+A+ K
Sbjct: 183 TFHELNGKMVEVKRAVPK 200


>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 411

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 31/71 (43%), Positives = 48/71 (67%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           + +E+ LRE+F+ +G +    V+ DK TG+ RGFGFV F D   +DRV LQ+ H I  + 
Sbjct: 16  ETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV-LQEKHSIDTRE 74

Query: 441 LDVKKAISKTD 473
           +DVK+A+S+ +
Sbjct: 75  VDVKRAMSREE 85



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 25/68 (36%), Positives = 43/68 (63%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
           + +E+ R+YF  +G +  V+++ D+ T + RGFGFV FD  D VD V  +  H +  + +
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180

Query: 444 DVKKAISK 467
           +VK+A+ K
Sbjct: 181 EVKRALPK 188



 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 22/63 (34%), Positives = 39/63 (61%)
 Frame = +1

Query: 10  KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
           ++++E +G + DV +M D  T R +GFGF+++     VD   +   H + G+ VE KRA+
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRAL 186

Query: 190 PRE 198
           P++
Sbjct: 187 PKD 189



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 40/65 (61%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L+E +  +GE+   +VM+D  T R +GFGF+ +S   ++D     + H ID R V+ KRA
Sbjct: 22  LREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK-HSIDTREVDVKRA 80

Query: 187 VPREE 201
           + REE
Sbjct: 81  MSREE 85


>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 358

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 28/66 (42%), Positives = 45/66 (68%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           +  K+++ Q+G I DVVVM D +T+R +GFGFI+Y     VD+      H+++G++VE K
Sbjct: 47  AEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 106

Query: 181 RAVPRE 198
            AVP++
Sbjct: 107 LAVPKD 112



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/82 (32%), Positives = 47/82 (57%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+        + E + ++YF+ FG I  V V+ D  T + RGFGF+ +D  + VD+V  +
Sbjct: 34  KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93

Query: 414 QNHQIKDQHLDVKKAISKTDMS 479
             H++  + ++VK A+ K DM+
Sbjct: 94  TFHELNGKMVEVKLAVPK-DMA 114


>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 28/66 (42%), Positives = 45/66 (68%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           +  K+++ Q+G I DVVVM D +T+R +GFGFI+Y     VD+      H+++G++VE K
Sbjct: 120 AEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179

Query: 181 RAVPRE 198
            AVP++
Sbjct: 180 LAVPKD 185



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/65 (38%), Positives = 47/65 (72%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L++++  +GE+++ V+MKD  T R++GFGF+ ++  ++ +     + H IDG+IVE K+A
Sbjct: 22  LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEAKKA 80

Query: 187 VPREE 201
           VPR++
Sbjct: 81  VPRDD 85



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/71 (38%), Positives = 45/71 (63%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           +  E+ LR+YF +FG ++   ++ D+ TG+ RGFGFV F D +  +RV L + H I  + 
Sbjct: 16  ETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKI 74

Query: 441 LDVKKAISKTD 473
           ++ KKA+ + D
Sbjct: 75  VEAKKAVPRDD 85



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/82 (32%), Positives = 47/82 (57%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+        + E + ++YF+ FG I  V V+ D  T + RGFGF+ +D  + VD+V  +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166

Query: 414 QNHQIKDQHLDVKKAISKTDMS 479
             H++  + ++VK A+ K DM+
Sbjct: 167 TFHELNGKMVEVKLAVPK-DMA 187


>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 28/66 (42%), Positives = 45/66 (68%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           +  K+++ Q+G I DVVVM D +T+R +GFGFI+Y     VD+      H+++G++VE K
Sbjct: 120 AEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179

Query: 181 RAVPRE 198
            AVP++
Sbjct: 180 LAVPKD 185



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/65 (38%), Positives = 47/65 (72%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L++++  +GE+++ V+MKD  T R++GFGF+ ++  ++ +     + H IDG+IVE K+A
Sbjct: 22  LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEAKKA 80

Query: 187 VPREE 201
           VPR++
Sbjct: 81  VPRDD 85



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/71 (38%), Positives = 45/71 (63%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           +  E+ LR+YF +FG ++   ++ D+ TG+ RGFGFV F D +  +RV L + H I  + 
Sbjct: 16  ETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKI 74

Query: 441 LDVKKAISKTD 473
           ++ KKA+ + D
Sbjct: 75  VEAKKAVPRDD 85



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/82 (32%), Positives = 47/82 (57%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+        + E + ++YF+ FG I  V V+ D  T + RGFGF+ +D  + VD+V  +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166

Query: 414 QNHQIKDQHLDVKKAISKTDMS 479
             H++  + ++VK A+ K DM+
Sbjct: 167 TFHELNGKMVEVKLAVPK-DMA 187


>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
           protein similar to SP|P48809 Heterogeneous nuclear
           ribonucleoprotein 27C (hnRNP 48) {Drosophila
           melanogaster}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM);
           non-consensus TA donor splice site at exon 6
          Length = 379

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 31/81 (38%), Positives = 51/81 (62%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           LK++  ++G++ D +VMKD  T RS+GFG++T++ A     A     H +  RI+E K A
Sbjct: 19  LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE-HFLGNRILEVKVA 77

Query: 187 VPREEIKRPEASATVKKLFVA 249
            P+EE+++P    T  ++FVA
Sbjct: 78  TPKEEMRQPAKKVT--RIFVA 96



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/71 (35%), Positives = 41/71 (57%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           S  +  +E++GEI D+ + KD  +K+ +G GFIT+S A  V++   +  H + G  V   
Sbjct: 105 SDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED-THDLGGTTVAVD 163

Query: 181 RAVPREEIKRP 213
           RA P+E+   P
Sbjct: 164 RATPKEDDHPP 174



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 27/81 (33%), Positives = 46/81 (56%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+V      DI+ + L++Y S FG++    V+ D+ TG+ RGFG+V F   +   +  L+
Sbjct: 4   KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDA-KNALK 62

Query: 414 QNHQIKDQHLDVKKAISKTDM 476
             H + ++ L+VK A  K +M
Sbjct: 63  GEHFLGNRILEVKVATPKEEM 83



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 25/74 (33%), Positives = 42/74 (56%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L++++ ++G I D  + KDPK    +GFGF+T+++  + D     R H+I G+ V    A
Sbjct: 256 LRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-RRSHEICGQEVAIDSA 314

Query: 187 VPREEIKRPEASAT 228
            P +E   P A A+
Sbjct: 315 TPLDE-AGPSAGAS 327



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/75 (33%), Positives = 39/75 (52%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+      Q+   +DLR+YF  FG+I    +  D +    RGFGFV F +    DRV  +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-R 299

Query: 414 QNHQIKDQHLDVKKA 458
           ++H+I  Q + +  A
Sbjct: 300 RSHEICGQEVAIDSA 314


>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
           protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 423

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
           LK F  ++GEI D V+MKD KT + +GFGF+TY+ + +VD+  Q+N  H I G+ VE KR
Sbjct: 59  LKHF-GKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN--HIIIGKQVEIKR 115

Query: 184 AVPREEIKRPEASATVKKLFVAG 252
            +PR  +   +     KK+FV G
Sbjct: 116 TIPRGSMSSNDFK--TKKIFVGG 136



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
 Frame = +1

Query: 10  KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRIVEPKR 183
           KEF+ Q+GE+ +  +M+D  T RS+GFGF+TY    MVD   A+ NR  ++ G  VE K+
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNR-IELSGTQVEIKK 205

Query: 184 AVPREEIKRPEASATVKKLF 243
           A P    K+P +  T  K F
Sbjct: 206 AEP----KKPNSVTTPSKRF 221



 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 25/82 (30%), Positives = 46/82 (56%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+      ++    +  ++F  +G I    ++ D++TG+ RGFGFV + D   VD+V +Q
Sbjct: 43  KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV-IQ 101

Query: 414 QNHQIKDQHLDVKKAISKTDMS 479
            NH I  + +++K+ I +  MS
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSMS 123



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+        +++++ +E+F  FG +    ++ D  TG+ RGFGFV ++  D VD +  +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190

Query: 414 QNH-QIKDQHLDVKKAISK 467
            N  ++    +++KKA  K
Sbjct: 191 GNRIELSGTQVEIKKAEPK 209


>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
           RNA binding protein GI:18181938 from (Arabidopsis
           thaliana); contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
           domain 15450911 gb AY054536.1
          Length = 360

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/72 (38%), Positives = 43/72 (59%)
 Frame = +1

Query: 10  KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 189
           K ++E++G   DVVVM D  T R +GFGF+TY     V+    +  H++  + VE KRA+
Sbjct: 137 KSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAI 196

Query: 190 PREEIKRPEASA 225
           P+E I+    +A
Sbjct: 197 PKEGIQSNNGNA 208



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 28/78 (35%), Positives = 42/78 (53%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+       +  EE+ + YF  FG    V V+ D  T + RGFGFV +D  D V+ V   
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180

Query: 414 QNHQIKDQHLDVKKAISK 467
             H++ D+ ++VK+AI K
Sbjct: 181 NFHELSDKRVEVKRAIPK 198



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
 Frame = +3

Query: 228 R*KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYDPVDRV 404
           R K+      ++  EE L++YFS +G ++   V  +K TGK RGFGFV F +D D V   
Sbjct: 5   RYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK-- 62

Query: 405 CLQQNHQIKDQHLDVKKAISKTDM 476
            L+  H I  + +DV+KAI K ++
Sbjct: 63  ALRDTHFILGKPVDVRKAIRKHEL 86



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/67 (28%), Positives = 43/67 (64%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 183
           +LK+++ ++G +++ VV K+  T + +GFGF+ ++    V +A  +  H I G+ V+ ++
Sbjct: 21  ALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD-THFILGKPVDVRK 79

Query: 184 AVPREEI 204
           A+ + E+
Sbjct: 80  AIRKHEL 86


>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
           protein similar to GB:L02953 from [Xenopus laevis]
           (Nucleic Acids Res. 21, 999-1006 (1993)); contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 369

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ-QNHQIKDQH 440
           +EE++L+ YF  +G+I+   ++ D  TG+ RGFGFV F   D VDR+    + H++ D+ 
Sbjct: 168 LEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQ 227

Query: 441 LDVKKAISK 467
           +++K+A  K
Sbjct: 228 VEIKRAEPK 236



 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 26/67 (38%), Positives = 41/67 (61%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 452
           E    YF  FG +V   ++TD+ TG  RGFGFV F D    ++V L+++H I D+ +D+K
Sbjct: 80  ETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKV-LEEDHVIDDRKVDLK 138

Query: 453 KAISKTD 473
           + + + D
Sbjct: 139 RTLPRGD 145



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 195
           ++ ++GE+VD V+M D  T   +GFGF+T++ +  V E      H ID R V+ KR +PR
Sbjct: 85  YFGKFGEVVDSVIMTDRITGNPRGFGFVTFADS-AVAEKVLEEDHVIDDRKVDLKRTLPR 143

Query: 196 -EEIKRPEASATVKKLFVAG 252
            ++    +A +  +K+FV G
Sbjct: 144 GDKDTDIKAVSKTRKIFVGG 163



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
           LK ++  +G+I++  +M D  T RS+GFGF+T+     VD    + + H++  + VE KR
Sbjct: 173 LKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKR 232

Query: 184 AVPR 195
           A P+
Sbjct: 233 AEPK 236


>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 358

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
 Frame = +3

Query: 180 ASSSKGRD*KTRS*CHR*KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 359
           A  ++ +D KT+      K+        + E++L+++F+ +GN+V   V+ D ET + RG
Sbjct: 98  AGGNQSKDIKTK------KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRG 151

Query: 360 FGFVEFDDYDPVDRVCLQQNH-QIKDQHLDVKKAISKTDMS 479
           FGFV FD  + VD +  + N   + D  +++KKA  K  ++
Sbjct: 152 FGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLN 192



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 29/78 (37%), Positives = 46/78 (58%)
 Frame = +1

Query: 19  YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 198
           + ++GEI D V+M+D  T + +GFGFIT++   +VD+   +  H I+G+ VE KR +P+ 
Sbjct: 39  FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIPKG 97

Query: 199 EIKRPEASATVKKLFVAG 252
                      KK+FV G
Sbjct: 98  AGGNQSKDIKTKKIFVGG 115



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRIVEPK 180
           LK+F+ ++G +V+  V++D +T RS+GFGF+ +    +VDE  ++ N     D + VE K
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQ-VEIK 183

Query: 181 RAVPREEIKRPEAS 222
           +A P++ + R   S
Sbjct: 184 KAEPKKSLNRSPPS 197



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 23/78 (29%), Positives = 41/78 (52%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+      +D       ++F  +G I    ++ D+ TG+ RGFGF+ F D   VD+V ++
Sbjct: 20  KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV-IE 78

Query: 414 QNHQIKDQHLDVKKAISK 467
             H I  + +++K+ I K
Sbjct: 79  DTHVINGKQVEIKRTIPK 96


>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 231

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 29/78 (37%), Positives = 46/78 (58%)
 Frame = +1

Query: 19  YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 198
           + ++GEI D V+M+D  T + +GFGFIT++   +VD+   +  H I+G+ VE KR +P+ 
Sbjct: 39  FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIPKG 97

Query: 199 EIKRPEASATVKKLFVAG 252
                      KK+FV G
Sbjct: 98  AGGNQSKDIKTKKIFVGG 115



 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 26/80 (32%), Positives = 45/80 (56%)
 Frame = +3

Query: 180 ASSSKGRD*KTRS*CHR*KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 359
           A  ++ +D KT+      K+        + E++L+++F+ +GN+V   V+ D ET + RG
Sbjct: 98  AGGNQSKDIKTK------KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRG 151

Query: 360 FGFVEFDDYDPVDRVCLQQN 419
           FGFV FD  + VD +  + N
Sbjct: 152 FGFVIFDSEEVVDELLSKGN 171



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 23/78 (29%), Positives = 41/78 (52%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+      +D       ++F  +G I    ++ D+ TG+ RGFGF+ F D   VD+V ++
Sbjct: 20  KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV-IE 78

Query: 414 QNHQIKDQHLDVKKAISK 467
             H I  + +++K+ I K
Sbjct: 79  DTHVINGKQVEIKRTIPK 96



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 17/41 (41%), Positives = 30/41 (73%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 129
           LK+F+ ++G +V+  V++D +T RS+GFGF+ +    +VDE
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165


>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 304

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/73 (38%), Positives = 41/73 (56%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 183
           +++ ++EQ+GEIV+ VV+ D  T RSKG+GF+T+ +A     A  N    IDGR      
Sbjct: 37  TMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNL 96

Query: 184 AVPREEIKRPEAS 222
           A    +  RP  S
Sbjct: 97  ACLGAQKPRPPTS 109



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 21/53 (39%), Positives = 31/53 (58%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           + + + +R YF  FG IV   V+TDK TG+ +G+GFV F + +   R C   N
Sbjct: 32  ETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84


>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 100

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 27/60 (45%), Positives = 36/60 (60%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L  ++E++GEIV   V+ D  T+RSKGFGF+T+ +      A  N  H IDGR V  K A
Sbjct: 25  LISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84



 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 25/62 (40%), Positives = 32/62 (51%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVK 452
           E L  YF  FG IV   VV D  T + +GFGFV F + +   R C   NH I  + ++ K
Sbjct: 23  EGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCK 82

Query: 453 KA 458
            A
Sbjct: 83  LA 84


>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
           Glycine-rich RNA-binding protein from {Sinapis alba}
           SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
           thaliana} SP|Q03251; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 117

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           QD +E+DL + FS FGN++   ++ D++TGK R FGFV F++
Sbjct: 16  QDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           L + + ++G ++D  ++ D  T +S+ FGF+T+ +   + +A
Sbjct: 23  LTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64


>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 146

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           +++R YF  FG I+   ++TDK TGK +G+GFV F D D   R     N
Sbjct: 31  DEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPN 79



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/53 (33%), Positives = 34/53 (64%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           ++ +++Q+GEI++ V++ D  T +SKG+GF+T+  +     A  +    IDGR
Sbjct: 33  MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85


>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 169

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 26/70 (37%), Positives = 39/70 (55%)
 Frame = +3

Query: 249 WTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
           WT +   +E L  +F  FG I+ V+VV D+ET + +G+GFV F D +   R C   N  I
Sbjct: 22  WTTR---KEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTI 78

Query: 429 KDQHLDVKKA 458
           + +  + K A
Sbjct: 79  EGRITNCKLA 88



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 24/67 (35%), Positives = 39/67 (58%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L  F++++GEI+ V V+ D +T RS+G+GF+T+  A     A  +    I+GRI   K A
Sbjct: 29  LINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLA 88

Query: 187 VPREEIK 207
               ++K
Sbjct: 89  FVGAKVK 95


>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM);
           is the location of EST 197B1T7 , gb|AA597386
          Length = 274

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/59 (37%), Positives = 34/59 (57%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
           KV       + + E LR +F  +G+I+   V+TDK TG+ +G+GFV F D +   R C+
Sbjct: 25  KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           +L+  ++Q+G+I++ VV+ D  T RSKG+GF+T+        A  +    IDGR
Sbjct: 39  TLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGR 92


>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 271

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           +++R YF  FG I+   ++TDK TGK +G+GFV F + D   R     N
Sbjct: 31  DEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/53 (35%), Positives = 35/53 (66%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           ++ ++EQ+GEI++ V++ D  T +SKG+GF+T+ ++     A  +    IDGR
Sbjct: 33  MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           +++R YF  FG I+   ++TDK TGK +G+GFV F + D   R     N
Sbjct: 31  DEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/53 (35%), Positives = 35/53 (66%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           ++ ++EQ+GEI++ V++ D  T +SKG+GF+T+ ++     A  +    IDGR
Sbjct: 33  MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85


>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 22/59 (37%), Positives = 33/59 (55%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
           KV       +  +  LR YF  FG+IV   V+TDK +G+ +G+GFV F D +   + C+
Sbjct: 8   KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           SL+ ++EQ+G+IV+ VV+ D  + RSKG+GF+T+       +A  +    IDGR
Sbjct: 22  SLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75


>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 245

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 22/59 (37%), Positives = 33/59 (55%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
           KV       +  +  LR YF  FG+IV   V+TDK +G+ +G+GFV F D +   + C+
Sbjct: 8   KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           SL+ ++EQ+G+IV+ VV+ D  + RSKG+GF+T+       +A  +    IDGR
Sbjct: 22  SLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75


>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
           glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
           thaliana] GI:2826811
          Length = 153

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHL 443
           ++  LR+ F+ FG++V   V+ D+ETG+ RGFGFV F+D         + +  ++  +H+
Sbjct: 47  DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106

Query: 444 DVKKA 458
            V  A
Sbjct: 107 RVNPA 111



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEP 177
           +SL++ +  +G++VD  V+ D +T RS+GFGF+ ++       A +    K ++GR +  
Sbjct: 49  ASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108

Query: 178 KRAVPREEIKR 210
             A  R    R
Sbjct: 109 NPANDRPSAPR 119


>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
           glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
           thaliana] GI:2826811
          Length = 158

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHL 443
           ++  LR+ F+ FG++V   V+ D+ETG+ RGFGFV F+D         + +  ++  +H+
Sbjct: 47  DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106

Query: 444 DVKKA 458
            V  A
Sbjct: 107 RVNPA 111



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEP 177
           +SL++ +  +G++VD  V+ D +T RS+GFGF+ ++       A +    K ++GR +  
Sbjct: 49  ASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108

Query: 178 KRAVPREEIKR 210
             A  R    R
Sbjct: 109 NPANDRPSAPR 119


>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 285

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 407
           KV       + + E LR++F  +G I+   V+ DK TG+ +G+GFV F D +   R C
Sbjct: 25  KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 22/54 (40%), Positives = 34/54 (62%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           +L++ +EQ+GEI++ VV+ D  T RSKG+GF+T+        A  +    IDGR
Sbjct: 39  TLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGR 92


>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
           RNA-binding protein from [Solanum tuberosum]
           GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
           sylvestris] GI:624925; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 309

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           ++E+ LRE F+ +G +V   V+ D+ETG+ RGFGFV F
Sbjct: 51  MDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPK 180
           SL+E + ++GE+VD  V+ D +T RS+GFGF+T++ +     A Q      + GR+V+  
Sbjct: 55  SLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVN 114

Query: 181 RAVPR 195
            A  R
Sbjct: 115 YANDR 119


>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 105

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 18/38 (47%), Positives = 28/38 (73%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           +EDL+  FS FG+++   ++ D+E+G+ RGFGFV F D
Sbjct: 19  DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 13/42 (30%), Positives = 28/42 (66%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           L+  + Q+G+++D  ++ D ++ RS+GFGF+T+     + +A
Sbjct: 22  LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63


>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 92

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 18/38 (47%), Positives = 28/38 (73%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           +EDL+  FS FG+++   ++ D+E+G+ RGFGFV F D
Sbjct: 19  DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 183
           L+  + Q+G+++D  ++ D ++ RS+GFGF+T+  +  M D  +     ++DGR++    
Sbjct: 22  LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81

Query: 184 AVPR 195
           A  R
Sbjct: 82  AQSR 85


>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 126

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 18/38 (47%), Positives = 28/38 (73%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           +EDL+  FS FG+++   ++ D+E+G+ RGFGFV F D
Sbjct: 19  DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 183
           L+  + Q+G+++D  ++ D ++ RS+GFGF+T+  +  M D  +     ++DGR++    
Sbjct: 22  LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81

Query: 184 AVPR 195
           A  R
Sbjct: 82  AQSR 85


>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 169

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 18/38 (47%), Positives = 28/38 (73%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           +EDL+  FS FG+++   ++ D+E+G+ RGFGFV F D
Sbjct: 19  DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 183
           L+  + Q+G+++D  ++ D ++ RS+GFGF+T+  +  M D  +     ++DGR++    
Sbjct: 22  LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81

Query: 184 AVPR 195
           A  R
Sbjct: 82  AQSR 85


>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 347

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/54 (40%), Positives = 36/54 (66%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           ++K+ +EQ+GEI++ VV+ D  + RSKG+GF+T+ +A     A  +    IDGR
Sbjct: 28  TMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
           KV       +  +E ++++F  FG I+   V+TDK +G+ +G+GFV F + +     C+
Sbjct: 14  KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72


>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 242

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/54 (40%), Positives = 36/54 (66%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           ++K+ +EQ+GEI++ VV+ D  + RSKG+GF+T+ +A     A  +    IDGR
Sbjct: 28  TMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
           KV       +  +E ++++F  FG I+   V+TDK +G+ +G+GFV F + +     C+
Sbjct: 14  KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72


>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 249

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/54 (40%), Positives = 36/54 (66%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           ++K+ +EQ+GEI++ VV+ D  + RSKG+GF+T+ +A     A  +    IDGR
Sbjct: 28  TMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
           KV       +  +E ++++F  FG I+   V+TDK +G+ +G+GFV F + +     C+
Sbjct: 14  KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72


>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana] ; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 87

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPK 180
           L+E +  +G +VD +VM+D  T RS+GFGF+TYS     + A +    K ++GR V  K
Sbjct: 19  LREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVK 77



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 398
           ++ LRE FS +GN+V   V+ D+ T + RGFGFV +  +   +
Sbjct: 16  DDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAE 58


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQ--- 437
           E+EDL   FS FG +VS  V+ D +TG    + F+EF++ +  ++   + ++ + D    
Sbjct: 255 EDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRI 314

Query: 438 HLDVKKAISK 467
           H+D  +++SK
Sbjct: 315 HVDFSQSVSK 324


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = +3

Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           +WT  D     LR+ F  +G++V   VV DK +G+ RGFGF+ FD+   +D      N
Sbjct: 15  AWTTSD---RGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
           L++ +E++G +V+  V+ D  + RS+GFGFIT+ +   +DEA        +DGR +   +
Sbjct: 23  LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82

Query: 184 AVPRE 198
           A P +
Sbjct: 83  AQPHQ 87


>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
           similar to glycine-rich RNA-binding protein from
           {Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
           sativum]; contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 155

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 171
           LKE +  +G+IVD VV+ D ++  S+GFGF+TY    + + A     +K +DGRI+
Sbjct: 52  LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC-L 410
           K+         + E L+E F +FG IV   VV D+E+G  RGFGFV +D  +  +     
Sbjct: 37  KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96

Query: 411 QQNHQIKDQHLDVKKAIS 464
            QN ++  + + V  A S
Sbjct: 97  MQNKELDGRIIGVHPADS 114


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI-KDQHLDVKK 455
           L++ F  FGNIVS  V T  E GK RG+GFV+F+  D         N  I  D+ + V K
Sbjct: 128 LQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGK 186

Query: 456 AISKTD 473
            + KTD
Sbjct: 187 FMKKTD 192



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD-DYDPVDRVCLQQNHQIKDQH 440
           + EE+LR++FS  G I S  ++ D E GK +GFGFV F    + +D V          + 
Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKP 373

Query: 441 LDVKKAISKTD 473
           L V  A  K D
Sbjct: 374 LYVAIAQKKED 384



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
           D+ E+ LRE F+ FG IVS+++  D E    RG+ FV FD+ +   R
Sbjct: 211 DVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARR 256



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 108
           L++ + Q G I    +M D K K SKGFGF+ +S
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFS 352


>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
           similar to cleavage stimulation factor 64 kilodalton
           subunit GB:AAD47839 GI:5713194 from [Drosophila
           melanogaster], SP|P33240 Cleavage stimulation factor, 64
           kDa subunit {Homo sapiens}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 461

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 21/41 (51%), Positives = 27/41 (65%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           D  EE LRE     G +VS  +VTD+ETGK +G+GF E+ D
Sbjct: 19  DATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKD 59


>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
           (RNA-binding protein cp31) {Arabidopsis thaliana};
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 398
           D++   L + FS  G +V   VV D+ETG+ RGFGFV   D D ++
Sbjct: 254 DVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/42 (38%), Positives = 29/42 (69%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           L++ + + G++V+  V+ D +T RS+GFGF+T S    ++EA
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPK 180
           +L   +EQ G +    V+ + +T +S+GFGF+T S     + A +    + ++GR++   
Sbjct: 165 ALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN 224

Query: 181 RAVPREEIKRPEASATV 231
           +A PR    RPE +  V
Sbjct: 225 KAAPRG--SRPERAPRV 239



 Score = 35.5 bits (78), Expect = 0.035
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQ 437
           D+  + L   F   G +    V+ ++ET + RGFGFV     D  +    + N + +  +
Sbjct: 160 DVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGR 219

Query: 438 HLDVKKA 458
            L V KA
Sbjct: 220 LLTVNKA 226


>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
           RNA-binding protein from [Nicotiana tabacum]
           GI:15822703, [Nicotiana sylvestris] GI:624925; contains
           Pfam profile: PF00076 RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 143

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 19/44 (43%), Positives = 31/44 (70%)
 Frame = +3

Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           SW+   ++E+ L++ FS+FG +  V +  DK +G+ RGFGFV+F
Sbjct: 49  SWS---VDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 111
           SLK+ +  +GE+ +V +  D  + RS+GFGF+ +++
Sbjct: 56  SLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91


>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 272

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
           +DLR YF  FG +V  +VV++   G+ +G+GF+ F DY    R  LQ +  I D
Sbjct: 26  DDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR-ALQNSKPIID 78



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGR 165
           L+ ++EQ+G++VD  V+ +    RSKG+GFIT+      V   QN++P  IDGR
Sbjct: 28  LRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNSKP-IIDGR 80


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQ 437
           ++ + DL   FS FG+I+   ++ +++TG+ RGFGF+ F D   +D    + +     D+
Sbjct: 17  EVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDR 76

Query: 438 HLDVKKAISK 467
            + V +A  K
Sbjct: 77  VISVNRAEPK 86



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
           L+  + ++G+I+D  +M +  T RS+GFGFIT++    +DE+ +         R++   R
Sbjct: 23  LERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNR 82

Query: 184 AVPR 195
           A P+
Sbjct: 83  AEPK 86


>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 17/41 (41%), Positives = 28/41 (68%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
           ++  L++ F++FG +   +V+ D+ETG+ RGFGFV F   D
Sbjct: 47  DDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/55 (36%), Positives = 37/55 (67%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           SSLK+ +  +GE+ +  V+ D +T RS+GFGF+++S     +++ NN   ++DG+
Sbjct: 49  SSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99


>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 17/41 (41%), Positives = 28/41 (68%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
           ++  L++ F++FG +   +V+ D+ETG+ RGFGFV F   D
Sbjct: 47  DDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/55 (36%), Positives = 37/55 (67%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           SSLK+ +  +GE+ +  V+ D +T RS+GFGF+++S     +++ NN   ++DG+
Sbjct: 49  SSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99


>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 352

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           D+ E DL   FS +G IV V+++ DK TGK +GF F+ ++D
Sbjct: 46  DLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYED 86



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +1

Query: 19  YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 141
           + Q+GEIVDV +++D  T +SKGF F+ Y        A +N
Sbjct: 56  FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDN 96


>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
           to RNA-binding protein GB:S46286 from [Nicotiana
           sylvestris]
          Length = 289

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 34/78 (43%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+         +E  LRE FS +G +V   ++ D+ETG+ RGF FV F   +        
Sbjct: 35  KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94

Query: 414 QNHQIKDQHLDVKKAISK 467
               +  + + V  A  +
Sbjct: 95  DGQDLHGRRIRVNYATER 112



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L+E + ++GE+VD  ++ D +T RS+GF F+T++       A       + GR +    A
Sbjct: 50  LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYA 109

Query: 187 VPR 195
             R
Sbjct: 110 TER 112


>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
           SP|P10979 Glycine-rich RNA-binding, abscisic
           acid-inducible protein {Zea mays}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 142

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 17/54 (31%), Positives = 34/54 (62%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
           E L++ F++FG +V   V+TD+++G+ +GFGFV +   +  ++   + N +  D
Sbjct: 48  EKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLD 101



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 183
           L++ +  +G++VD  V+ D  + RSKGFGF+TY+     ++A+     K +DG ++    
Sbjct: 50  LQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDP 109

Query: 184 AVPREEIKRP 213
           A PRE  +RP
Sbjct: 110 ARPREP-RRP 118


>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
           sylvestris]
          Length = 293

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/69 (31%), Positives = 38/69 (55%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLD 446
           + + LR +FS FG IVS  V+ D++TG+ R F F+ F   +  D        Q + + + 
Sbjct: 224 QPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRII 283

Query: 447 VKKAISKTD 473
           V++ I K++
Sbjct: 284 VREGIEKSE 292



 Score = 35.1 bits (77), Expect = 0.047
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L+  + ++G IV   V+ D KT R++ F F++++     D A +      +G   E +R 
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-----FNGTQYEGRRI 282

Query: 187 VPREEIKRPEA 219
           + RE I++ E+
Sbjct: 283 IVREGIEKSES 293



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
           L + F  FG ++SV V  + +TG+ RG G+V
Sbjct: 124 LLDMFQPFGTVISVEVSRNPQTGESRGSGYV 154



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 102
           + L + ++ +G ++ V V ++P+T  S+G G++T
Sbjct: 122 AQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVT 155


>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 289

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 398
           D++   L   FS  G +V   VV+D+ETG+ RGFGFV+  + + V+
Sbjct: 217 DVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
 Frame = +1

Query: 4   SLKEFYEQWG--EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 174
           +L   +EQ G  EI +V+  +D  T +S+GFGF+T S     ++A +     +++GR + 
Sbjct: 128 ALAMLFEQAGTVEISEVIYNRD--TDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLT 185

Query: 175 PKRAVPREEIKRPEASATV 231
             RA PR    RPE    V
Sbjct: 186 VNRAAPRG--SRPERQPRV 202



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           L+  + + G++VD  V+ D +T RS+GFGF+  S  + V+ A
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQ 437
           D++ + L   F   G +    V+ +++T + RGFGFV     +  ++   + N  ++  +
Sbjct: 123 DVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGR 182

Query: 438 HLDVKKA 458
            L V +A
Sbjct: 183 RLTVNRA 189


>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
           non-consensus TA donor splice site at exon 2,
           polyadenylate-binding protein - Triticum aestivum
           (common wheat),PIR:T06979
          Length = 443

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLD 446
           ++DL+  F  +G I S  V+ D E GK +GFGFV F++ D   R     N H+  D+   
Sbjct: 42  DDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWY 100

Query: 447 VKKAISKTD 473
           V +A  K++
Sbjct: 101 VGRAQKKSE 109



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
           LK  + ++G+I   VVMKD + K SKGFGF+ +  A     A ++   HK D +     R
Sbjct: 45  LKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 103

Query: 184 AVPREE 201
           A  + E
Sbjct: 104 AQKKSE 109



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           LKE +  +G +    VM+DP    SKG GF+ ++      EA +    ++ G+++E K
Sbjct: 148 LKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS----QLSGKMIESK 200


>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
           Cold-inducible RNA-binding protein (Glycine-rich
           RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
           {Rattus norvegicus} SP|Q61413,{Xenopus laevis};
           SP|O93235; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 102

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPK 180
           SL++ +  +G+I +  +++D +T+R KGFGFIT+       +A  +   KI DGR++  +
Sbjct: 22  SLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVE 81

Query: 181 RAVPREEIK 207
            A   EE++
Sbjct: 82  VAKNAEEVR 90



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
           ++ LR+ FS FG I    ++ D ET + +GFGF+ FD  D   +     + +I D  L
Sbjct: 20  DQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRL 77


>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
           3G / eIF3g nearly identical to eukaryotic translation
           initiation factor 3g [Arabidopsis thaliana] GI:12407751
          Length = 294

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/54 (40%), Positives = 28/54 (51%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           +D  E DL E F  FG +  V V  D++TG  RGFGFV F   +   R   + N
Sbjct: 222 EDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLN 275



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 183
           L E +  +G +  V V  D KT  S+GFGF+ +        A N    +  D  I+  + 
Sbjct: 229 LMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEW 288

Query: 184 AVPR 195
           A PR
Sbjct: 289 ATPR 292


>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 533

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 19/53 (35%), Positives = 33/53 (62%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
           EE++R YF   GN++ V+++ DK TG+++G  FV++      DR     ++QI
Sbjct: 133 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQI 185



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 12/42 (28%), Positives = 27/42 (64%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           ++ ++EQ G +++V ++KD +T + +G  F+ Y+ +   D A
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG------ 162
           ++E + Q+G + DV +M+D + ++S+G GF+ YS       A +  N  + + G      
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285

Query: 163 -RIVEPKRAVPRE 198
            R  EPKR  P E
Sbjct: 286 VRFAEPKRPKPGE 298


>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 747

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 19/53 (35%), Positives = 33/53 (62%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
           EE++R YF   GN++ V+++ DK TG+++G  FV++      DR     ++QI
Sbjct: 133 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQI 185



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 12/42 (28%), Positives = 27/42 (64%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           ++ ++EQ G +++V ++KD +T + +G  F+ Y+ +   D A
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG------ 162
           ++E + Q+G + DV +M+D + ++S+G GF+ YS       A +  N  + + G      
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285

Query: 163 -RIVEPKRAVPRE 198
            R  EPKR  P E
Sbjct: 286 VRFAEPKRPKPGE 298


>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 222

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
           E ++  +FS FG +  V V  +K+TGK + FGF++F+D +  +      N  +  +H+
Sbjct: 73  ETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHM 130



 Score = 35.5 bits (78), Expect = 0.035
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQNN---RPHKIDG 162
           + ++ F+ Q+G +  V V ++ KT +SK FGFI +     A +   A N+     H +  
Sbjct: 74  TEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKV 133

Query: 163 RIVEPKRAVP 192
            ++EP+   P
Sbjct: 134 HVIEPENVKP 143


>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 159

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPK 180
           +L+  + Q+G+++D  ++ D +T RS+GFGF+T+  +  M D  +      +DGR +   
Sbjct: 23  ALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82

Query: 181 RAVPR 195
            A  R
Sbjct: 83  EAQSR 87



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           ++  L   F+ +G+++   ++ D+ETG+ RGFGFV F D
Sbjct: 20  DDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58


>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 176

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPK 180
           +L+  + Q+G+++D  ++ D +T RS+GFGF+T+  +  M D  +      +DGR +   
Sbjct: 23  ALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82

Query: 181 RAVPR 195
            A  R
Sbjct: 83  EAQSR 87



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           ++  L   F+ +G+++   ++ D+ETG+ RGFGFV F D
Sbjct: 20  DDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58


>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
           to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
           associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
           splicing factor SF3b 49 kDa subunit) {Homo sapiens};
           contains Pfam profile PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 363

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVS-VSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKD 434
           D++E+ L + FS FG I S   ++ D +TG  RGFGF+ +D ++  D        Q + +
Sbjct: 122 DVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSN 181

Query: 435 QHLDVKKAISK 467
           + + V  A  K
Sbjct: 182 RQITVSYAYKK 192



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 52  VMKDPKTKRSKGFGFITYSQAHMVDEA 132
           +M+DP T  S+GFGFI+Y      D A
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAA 170


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 425
           +E  L++ FS+F  +    V+T+K TG+ RG+GFV F   D  +      N Q
Sbjct: 43  DEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           SLK+ +  +  + +  VM +  T RS+G+GF+ +
Sbjct: 46  SLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79


>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 382

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           D   E+L+  F  +G I   SVV DK+TG+ +GFGFV F
Sbjct: 173 DTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 24/79 (30%), Positives = 36/79 (45%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 183
           +LK  +E +GEI +  V+ D  T R+KGFGF+ +        A  N   ++  R V    
Sbjct: 178 NLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLP 237

Query: 184 AVPREEIKRPEASATVKKL 240
           A P    K  E    V+ +
Sbjct: 238 ARPFNSGKPREQQQPVESV 256


>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
           nearly identical to SC35-like splicing factor SCL33, 33
           kD [Arabidopsis thaliana] GI:9843659
          Length = 220

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = +3

Query: 255 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 398
           + D  +EDLR+ F  FG +  + +  D  TG  RGFGFV+F   DP D
Sbjct: 44  RHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF--MDPAD 89



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 171
           L++ +EQ+G + D+ + +D  T   +GFGF+ +       +A+    H +DG ++
Sbjct: 52  LRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK----HHMDGYLL 102


>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 404

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
           D   E LR  FS++G++    V+ DK TGK +G+GFV F   D
Sbjct: 85  DTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L+  +  +G++ + +V+ D  T +SKG+GF+T+        A      KIDGR+   + A
Sbjct: 91  LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLA 150

Query: 187 VPREEIKRPE-ASATVKKLFVA 249
               +    + A  +++K++VA
Sbjct: 151 ASGNQGTGSQIADISMRKIYVA 172



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           D+  + L  +F  +G++    +  DK TGK RGF    +   +            I  +H
Sbjct: 177 DMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKH 236

Query: 441 LDVKKAI 461
           L+ K A+
Sbjct: 237 LNCKLAV 243


>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 404

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
           D   E LR  FS++G++    V+ DK TGK +G+GFV F   D
Sbjct: 85  DTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L+  +  +G++ + +V+ D  T +SKG+GF+T+        A      KIDGR+   + A
Sbjct: 91  LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLA 150

Query: 187 VPREEIKRPE-ASATVKKLFVA 249
               +    + A  +++K++VA
Sbjct: 151 ASGNQGTGSQIADISMRKIYVA 172



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           D+  + L  +F  +G++    +  DK TGK RGF    +   +            I  +H
Sbjct: 177 DMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKH 236

Query: 441 LDVKKAI 461
           L+ K A+
Sbjct: 237 LNCKLAV 243


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +3

Query: 255 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
           + D  +EDLR  F  FG +  + +  D  TG  RGFGF++F   DP D    +  HQ+
Sbjct: 45  RHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF--MDPAD--AAEAKHQM 98



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 171
           L+  +EQ+G + D+ + +D  T   +GFGFI +       EA+    H++DG ++
Sbjct: 53  LRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK----HQMDGYLL 103


>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM); contains Pfam profile PF00096:
           Zinc finger, C2H2 type
          Length = 613

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           D  +E+L+  F ++G I   SVV DK+TG+ +G+GFV F
Sbjct: 418 DTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 171
           +LK  +E +GEI +  V+ D  T R KG+GF+ +       EA      ++  RIV
Sbjct: 423 NLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIV 478


>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           SP|Q43349 29 kDa ribonucleoprotein, chloroplast
           precursor (RNA-binding protein cp29) {Arabidopsis
           thaliana}
          Length = 289

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           +++   L + F + GN+  V V+ DK TG+ RGFGFV       V+    Q N
Sbjct: 101 NVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFN 153



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPK 180
           +L+  + + G++V+  V+ D  + RSKGFGF+TY  +  V  A ++     +DGR +   
Sbjct: 219 ALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278

Query: 181 RAVPR 195
            A  R
Sbjct: 279 EAEAR 283



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 395
           SW   D+  E L   FS  G +V   V+ D+++G+ +GFGFV +D    V
Sbjct: 212 SWGVDDMALESL---FSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 165
           + L + +E  G +  V V+ D  T RS+GFGF+T S    V+  AQ    +++DGR
Sbjct: 105 AQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGR 160


>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein from {Daucus
           carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
           napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 185

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
           +E+ +   F+ FG +    ++ D+ETG+ +GF FV F D D +     + N Q  D
Sbjct: 56  DEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELD 111



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 165
           S++  + ++GE+ D  ++ D +T RSKGF F+T+     +  A       ++DGR
Sbjct: 59  SIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGR 113


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           +E++ L   FS+FG IV   V+ D+ TG  +G+GFV++ D
Sbjct: 491 LEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 165
           L   +  +GEIV   V+KD  T  SKG+GF+ Y+   M + A Q    ++ +GR
Sbjct: 496 LINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           +E++ L   FS+FG IV   V+ D+ TG  +G+GFV++ D
Sbjct: 491 LEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 165
           L   +  +GEIV   V+KD  T  SKG+GF+ Y+   M + A Q    ++ +GR
Sbjct: 496 LINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549


>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 565

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 446
           E  +RE   +FG +    +V D+ETG  +G+ F  + D    D  C   N  ++ D+ L 
Sbjct: 372 ESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 431

Query: 447 VKKA 458
           V++A
Sbjct: 432 VRRA 435



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           S ++E  E +G +    ++KD +T  SKG+ F  Y    + D A
Sbjct: 373 SQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416


>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 542

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 446
           E  +RE   +FG +    +V D+ETG  +G+ F  + D    D  C   N  ++ D+ L 
Sbjct: 372 ESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 431

Query: 447 VKKA 458
           V++A
Sbjct: 432 VRRA 435



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           S ++E  E +G +    ++KD +T  SKG+ F  Y    + D A
Sbjct: 373 SQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416


>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 573

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 446
           E  +RE   +FG +    +V D+ETG  +G+ F  + D    D  C   N  ++ D+ L 
Sbjct: 372 ESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT 431

Query: 447 VKKA 458
           V++A
Sbjct: 432 VRRA 435



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           S ++E  E +G +    ++KD +T  SKG+ F  Y    + D A
Sbjct: 373 SQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
           EE+L E+FSTFG I  V +V DKET + RG  ++
Sbjct: 274 EEELMEHFSTFGKISEVHLVLDKETKRSRGIAYI 307



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +3

Query: 270 EEDLREYFSTF---GNIVSVSVVTDKETGK--KRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
           +E L+++F+     G I+SV+++  K+  K    G+GFVEFD  +    V       + D
Sbjct: 582 DEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLD 641

Query: 435 QH 440
            H
Sbjct: 642 GH 643



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           L E +  +G+I +V ++ D +TKRS+G  +I Y
Sbjct: 277 LMEHFSTFGKISEVHLVLDKETKRSRGIAYILY 309


>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 261

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 407
           KV       D  +E + ++F  +G+I+   +++DK T + +G+GFV F D     R C
Sbjct: 18  KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 34/54 (62%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           ++ + + ++G+I++ V++ D  T+RSKG+GF+T+  A     A  +    I+GR
Sbjct: 32  AMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGR 85


>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 334

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPK 180
           +L+  + + G++V+  V+ D  + RSKGFGF+T S +  V +A N+     +DGR +   
Sbjct: 264 ALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 323

Query: 181 RAVPR 195
            A  R
Sbjct: 324 EAEAR 328



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           +++   L + F + GN+  V V+ DK TG+ RGFGFV       V+    Q N
Sbjct: 109 NVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFN 161



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 165
           + L + +E  G +  V V+ D  T RS+GFGF+T S A  V+  AQ    ++ +GR
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
           SW   D+  E+L   F+  G +V   V+ D+++G+ +GFGFV       V +
Sbjct: 257 SWGVDDMALENL---FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 305


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPK 180
           +L+  + + G++V+  V+ D  + RSKGFGF+T S +  V +A N+     +DGR +   
Sbjct: 272 ALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 331

Query: 181 RAVPR 195
            A  R
Sbjct: 332 EAEAR 336



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           +++   L + F + GN+  V V+ DK TG+ RGFGFV       V+    Q N
Sbjct: 109 NVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFN 161



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 165
           + L + +E  G +  V V+ D  T RS+GFGF+T S A  V+  AQ    ++ +GR
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
           SW   D+  E+L   F+  G +V   V+ D+++G+ +GFGFV       V +
Sbjct: 265 SWGVDDMALENL---FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 313


>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
           PABP, putative
          Length = 662

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI-KD 434
           + ++ + L E FS  G IVS  V TD   G+ RG+GFV+FD  D       + N ++  D
Sbjct: 143 KSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLND 201

Query: 435 QHLDVKKAISKTD 473
           + + V   + K +
Sbjct: 202 KQIFVGPFLRKEE 214



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           + +E LRE F+ FG I S  V+ D  +G  +G GFV F       RV  + N
Sbjct: 339 VTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMN 389



 Score = 35.1 bits (77), Expect = 0.047
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 422
           ++ +  L +YF+    +VSV V  D  T    G+G+V + + D  ++   + N+
Sbjct: 56  NVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNY 109



 Score = 35.1 bits (77), Expect = 0.047
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L+E + ++G I    VM+DP +  SKG GF+ +S A       N    K+ G        
Sbjct: 344 LRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVAL 402

Query: 187 VPREEIKRPEASATVKKL 240
             R+E +R +  A   ++
Sbjct: 403 AQRKEERRAKLQAQFSQM 420



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           LK  + Q+G I   VVM+D   K S+ FGF+ +
Sbjct: 241 LKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNF 272


>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH-QIKDQHLD 446
           E  +RE   +FG +   ++V D+ETG  +G+ F  + D    D  C   N  ++ D+ L 
Sbjct: 388 EVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLT 447

Query: 447 VKKAI 461
           V++AI
Sbjct: 448 VRRAI 452



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           ++E  E +G +    ++KD +T  SKG+ F  Y    + D A
Sbjct: 391 IRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432


>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV-DRVCLQQNHQIKDQ 437
           D+ E  L   F  +G I    ++  ++TG+ RGFGF+ F D     D +      ++ ++
Sbjct: 22  DVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNK 81

Query: 438 HLDVKKAISK 467
            + V KA  K
Sbjct: 82  VISVNKAEPK 91



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
           L+  ++++G+I +  +M    T R +GFGFIT++     D+A ++    ++  +++   +
Sbjct: 28  LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87

Query: 184 AVPR 195
           A P+
Sbjct: 88  AEPK 91


>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV-DRVCLQQNHQIKDQ 437
           D+ E  L   F  +G I    ++  ++TG+ RGFGF+ F D     D +      ++ ++
Sbjct: 22  DVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNK 81

Query: 438 HLDVKKAISK 467
            + V KA  K
Sbjct: 82  VISVNKAEPK 91



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
           L+  ++++G+I +  +M    T R +GFGFIT++     D+A ++    ++  +++   +
Sbjct: 28  LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87

Query: 184 AVPR 195
           A P+
Sbjct: 88  AEPK 91


>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
          Length = 425

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           ++E  L   FS  G +VSV V+ +K TG+  G+GF+EF  +   +R     N
Sbjct: 35  VDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYN 86



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           D+ +  L+E F   + ++    VVTD  TG+ +G+GFV+F +    +R   + N
Sbjct: 126 DVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMN 179



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 111
           F   +  +    V+ DP T RSKG+GF+ +++
Sbjct: 136 FRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAE 167



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           L   + Q GE+V V V+++  T + +G+GFI +
Sbjct: 40  LTSCFSQTGELVSVKVIRNKITGQPEGYGFIEF 72


>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
           similarity to RNA-binding protein from [Nicotiana
           tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
           [Solanum tuberosum] GI:15822705; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 146

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 425
           E+ L E FS  G +V   +V D+ + + +GFGFV F   D   +  ++ N Q
Sbjct: 47  EQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQ 98



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/43 (41%), Positives = 29/43 (67%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 135
           L E + + G++V+  ++ D  + RSKGFGF+T++ A   DEAQ
Sbjct: 50  LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASA---DEAQ 89


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 23/57 (40%), Positives = 35/57 (61%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIK 431
           ++ E+DLR+ F +FG++  V V  D ETG  +GFGFV+F   +   R  L  N Q++
Sbjct: 295 NMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDA-RNALNLNGQLE 349



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
           E D+ E+FS  G +  V ++ D+ + + RG G+VEF D   V          +  Q + V
Sbjct: 195 ERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMV 254

Query: 450 KKAISKTDM 476
           K + ++ ++
Sbjct: 255 KPSEAEKNL 263



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN-NRPHKIDGRIVEPKR 183
           L++ +E +G +  V V +D +T   KGFGF+ +++      A N N   +I GR ++   
Sbjct: 301 LRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSA 359

Query: 184 AVPREEIKRPEASAT 228
              + E+  PEA  T
Sbjct: 360 VTDQTEV--PEAGQT 372



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +1

Query: 13  EFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           EF+ + G++ DV ++ D  ++RS+G G++ +
Sbjct: 200 EFFSRAGKVRDVRIIMDRISRRSRGIGYVEF 230


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYD 389
           D   E+LRE F  FG +  V +  D  +G+ RGF FVEF D YD
Sbjct: 57  DCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYD 100



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 183
           L+E +E++G + DV + +D  + + +GF F+ +  A+   EAQ +   +   GR  E   
Sbjct: 63  LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGR--EITV 120

Query: 184 AVPREEIKRPE 216
            V  E  KRPE
Sbjct: 121 VVASESRKRPE 131


>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           chloroplast RNA-binding protein (cp33) GB:BAA06523
           (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
           (1995)); contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 174
           S L + + + G +VDV ++ D  T RS+GFGF+T        EA Q     +I GR V+
Sbjct: 130 SELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVK 188



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
           I   +L + F   G +V V +V DK T + RGFGFV
Sbjct: 127 ITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           ++  + L++ F     ++   V+ ++ TG+ RGFGF+ F+  + V       N
Sbjct: 229 NLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281



 Score = 31.9 bits (69), Expect = 0.44
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
           LK+ +     ++   V+ +  T RS+GFGFI++  A  V  A       +++GR +    
Sbjct: 235 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 294

Query: 184 AVPREE 201
           A  RE+
Sbjct: 295 ASEREK 300


>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
           protein low similarity to SP|Q03251 Glycine-rich
           RNA-binding protein 8 (CCR1 protein) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 181

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD-QHLD 446
           E+ LR+ F  FGN++ +++V DK   + +GF F+ ++  +   +     + +  D + + 
Sbjct: 90  EDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIF 149

Query: 447 VKKAISKTDMS 479
           V++A +++DMS
Sbjct: 150 VEEAKTRSDMS 160



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPK 180
           +L++ +EQ+G ++ + ++ D    R KGF F+ Y ++   +   Q      +DGR++  +
Sbjct: 92  TLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVE 151

Query: 181 RAVPREEIKR 210
            A  R ++ R
Sbjct: 152 EAKTRSDMSR 161


>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = +3

Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           S ++ DI+   LRE+FS+ G I +VSV  D++TG  +G  ++EF +
Sbjct: 411 SLSEDDIKNT-LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           +IE  D+  +F   G +V V   T+++ G  RGFG VEF
Sbjct: 307 NIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEF 345



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 111
           ++L+E +   GEI +V V  D  T  SKG  ++ +S+
Sbjct: 419 NTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           + ++ F+++ GE+VDV    +      +GFG + ++ +    +A       + GR +   
Sbjct: 311 ADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLD 370

Query: 181 RAVPREE 201
            A  R E
Sbjct: 371 IAQERGE 377


>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
           protein low similarity to tumor-rejection antigen SART3
           [Mus musculus] GI:7637845; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 817

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           +EED+R++F   G + S+ ++  K+TGK RG  + +F D
Sbjct: 663 QEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701


>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
           protein low similarity to tumor-rejection antigen SART3
           [Mus musculus] GI:7637845; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 816

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           +EED+R++F   G + S+ ++  K+TGK RG  + +F D
Sbjct: 663 QEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKD 434
           + + +E+L + F  FG   S  ++ D E GK +GFGFV F++ D   R     N +   D
Sbjct: 233 ESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDD 291

Query: 435 QHLDVKKAISKTD 473
           +   V KA  K++
Sbjct: 292 KEWFVGKAQKKSE 304



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           + + ++ LRE+F+ FG I S  V+ D  +G  RG GFV F   +   R   + N
Sbjct: 336 ESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMN 388



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
           + I+ + L E FS FG I+S  V  D  +G+ +G+GFV++D
Sbjct: 142 KSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYD 181



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
           S L E + Q G++V V V +D  T+RS G+G++ Y+       A N
Sbjct: 59  SQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           + +  L E F+  G +VSV V  D  T +  G+G+V +
Sbjct: 56  VTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNY 93



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/79 (25%), Positives = 39/79 (49%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L + + ++G     V+M+D + K SKGFGF+ +  +   D+A       ++G+  + K  
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENS---DDAA-RAVDALNGKTFDDKEW 294

Query: 187 VPREEIKRPEASATVKKLF 243
              +  K+ E    +K+ F
Sbjct: 295 FVGKAQKKSERETELKQKF 313


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 374
           +D  +++LR +FS  G +  V V TD+ETG  RGF +++
Sbjct: 492 EDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L+  + + GE+  V V  D +T  S+GF +I  +     DEA      +I G  +  + +
Sbjct: 499 LRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSG--FDEALQLSGSEIGGGNIHVEES 556

Query: 187 VPRE 198
            PR+
Sbjct: 557 RPRD 560


>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 310

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +3

Query: 309 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           IVSV V+ +K  G   G+GFVEF+ +D  D+V  + N
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFN 165



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           D+ +  L E FS  + ++ +  VV D  TG+ +G+GFV F D +   +   + N
Sbjct: 207 DVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVP 192
           F E++  +    V+ D  T RSKG+GF+ +   +   +A       K   R +    A P
Sbjct: 217 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 276

Query: 193 RE 198
           R+
Sbjct: 277 RK 278


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +3

Query: 309 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           IVSV V+ +K  G   G+GFVEF+ +D  D+V  + N
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFN 165



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           D+ +  L E FS  + ++ +  VV D  TG+ +G+GFV F D +   +   + N
Sbjct: 207 DVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           + +EDL++ F+ FG IVSV +   K      G GFV+F
Sbjct: 315 VTDEDLKQPFNEFGEIVSVKIPVGK------GCGFVQF 346



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVP 192
           F E++  +    V+ D  T RSKG+GF+ +   +   +A       K   R +    A P
Sbjct: 217 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 276

Query: 193 RE 198
           R+
Sbjct: 277 RK 278


>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
           PABP, putative non-consensus splice donor TA at exon 1;
           similar to polyadenylate-binding protein
           (poly(A)-binding protein) from [Triticum aestivum]
           GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
           thaliana} SP|P42731; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 407

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQ-HLD 446
           + DL+  F  FG I S  V+ D E GK R FGFV F+  +       + N  + D+  L 
Sbjct: 132 DADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELH 190

Query: 447 VKKAISKTD 473
           V +A  KT+
Sbjct: 191 VGRAQRKTN 199



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 22/60 (36%), Positives = 35/60 (58%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           + LK  + ++GEI   VVMKD + K S+ FGF+ + +A    EA      K++G +V+ K
Sbjct: 133 ADLKRLFGEFGEITSAVVMKDGEGK-SRRFGFVNFEKA----EAAVTAIEKMNGVVVDEK 187


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           +++E L+E FS +GN+ S  V+ + + G  RGFGFV + + +   R   + N
Sbjct: 343 VDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMN 393



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
           I+ + L E FS+FG I+S  V  D  TG+ +G+GFV+F+
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFE 184



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           LKE + ++G +    VM +P+   S+GFGF+ YS       A +    K+ GR       
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406

Query: 187 VPREEIKRPEASATVKKLFVAG 252
             R+E +R    A   ++   G
Sbjct: 407 AQRKEDRRAHLQALFSQIRAPG 428



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/71 (28%), Positives = 36/71 (50%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 183
           +L E +  +G I+   V  D  T RSKG+GF+ + +    +E+      K++G ++  K+
Sbjct: 151 ALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEK----EESAQAAIDKLNGMLMNDKQ 205

Query: 184 AVPREEIKRPE 216
                 I+R E
Sbjct: 206 VFVGHFIRRQE 216


>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 434

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +3

Query: 309 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           IVS+ V+ +K  G   G+GFVEF+ +D  D+V  + N
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFN 167



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           D+ +  L E FS  + ++ +  VV D  TG+ +G+GFV F D +   +   + N
Sbjct: 209 DVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 262



 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           + +EDL++ FS FG IVSV +   K      G GFV+F
Sbjct: 317 VTDEDLKQPFSEFGEIVSVKIPVGK------GCGFVQF 348



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVP 192
           F E++  +    V+ D  T RSKG+GF+ +   +   +A       K   R +    A P
Sbjct: 219 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 278

Query: 193 RE 198
           R+
Sbjct: 279 RK 280


>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 438

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
           ++ E+++L   F  FG ++S  V  DK TG  + FGF+ +D
Sbjct: 348 REFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 388



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 19  YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
           ++ +G+++   V  D  T  SK FGFI+Y        A N
Sbjct: 359 FQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398


>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 429

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
           ++ E+++L   F  FG ++S  V  DK TG  + FGF+ +D
Sbjct: 339 REFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 379



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 19  YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
           ++ +G+++   V  D  T  SK FGFI+Y        A N
Sbjct: 350 FQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389


>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
           protein low similarity to RNA-binding protein RGP-3
           [Nicotiana sylvestris] GI:1009363; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 156

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           E LR  F+ FG +    VVTD+ +G  +GFGFV +
Sbjct: 70  EGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 183
           L+  + Q+GE+ D  V+ D  +  SKGFGF+ Y+      +       K +DG ++  + 
Sbjct: 72  LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEY 131

Query: 184 AVPREE 201
           A PRE+
Sbjct: 132 ARPREQ 137


>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 405

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 404
           ++E  L   F+  G +VS  V+ +K+TG+  G+GF+EF  +   +RV
Sbjct: 73  MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119



 Score = 35.1 bits (77), Expect = 0.047
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 DIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           D+ +  L E F +++ ++    VV D+ TG+ +G+GFV F D     R   + N
Sbjct: 165 DVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +1

Query: 31  GEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDEAQNNRP 147
           GE+V   V+++ +T + +G+GFI   +++ A  V +  NN P
Sbjct: 86  GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAP 127


>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 306

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 404
           ++E  L   F+  G +VS  V+ +K+TG+  G+GF+EF  +   +RV
Sbjct: 73  MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119



 Score = 35.1 bits (77), Expect = 0.047
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 DIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           D+ +  L E F +++ ++    VV D+ TG+ +G+GFV F D     R   + N
Sbjct: 165 DVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +1

Query: 31  GEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDEAQNNRP 147
           GE+V   V+++ +T + +G+GFI   +++ A  V +  NN P
Sbjct: 86  GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAP 127


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI-KDQH 440
           + E DL ++F+  G +  V +V D  T + RGFGF+        +R     +H + + + 
Sbjct: 86  VTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 145

Query: 441 LDVKKA 458
           + V+KA
Sbjct: 146 ITVEKA 151



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKR 183
           L++ + + G++ DV ++ DP T+ S+GFGFI+       +    +  H +  GR++  ++
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 184 A 186
           A
Sbjct: 151 A 151


>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/56 (33%), Positives = 34/56 (60%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 174
           L   + ++G++VDV + +D +T  S+GF F+ Y      DEA +    ++DGR+V+
Sbjct: 32  LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVVD 83



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
           +DL   F+ +G +V V +  D+ TG  RGF FV +   D   +   + + ++ D
Sbjct: 30  DDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83


>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/56 (33%), Positives = 34/56 (60%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 174
           L   + ++G++VDV + +D +T  S+GF F+ Y      DEA +    ++DGR+V+
Sbjct: 32  LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVVD 83



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
           +DL   F+ +G +V V +  D+ TG  RGF FV +   D   +   + + ++ D
Sbjct: 30  DDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83


>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
           protein
          Length = 527

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           ++ E  LR+ F  FG +  V +  D ETG+ +GFGF++F
Sbjct: 275 NMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           E D+ E+FS  G +  V ++ D+ + + +G G++EF D
Sbjct: 181 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--NNRPHKIDGRIVE 174
           L++ +E +G +  V +  DP+T + KGFGFI + Q      AQ   N   +I GR ++
Sbjct: 281 LRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIK 338



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 13  EFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           EF+ + G++ DV ++ D  ++RSKG G+I +
Sbjct: 186 EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 216


>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
           3G, putative / eIF3g, putative similar to eukaryotic
           translation initiation factor 3g [Arabidopsis thaliana]
           GI:12407751; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 276

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           +D    DL E F  FG +    V  D++T   RGFGFV F   +   R   + N
Sbjct: 183 EDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLN 236



 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 183
           L E +  +G +    V  D KT  S+GFGF+++        A N    +  D  I+  + 
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEW 249

Query: 184 AVPREEI 204
           + P+ ++
Sbjct: 250 STPKTQL 256


>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 374

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/56 (32%), Positives = 36/56 (64%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 171
           +L+  +E +GE+V+V ++ D  +KRSKG+ F+ Y+     +EA      +++G+I+
Sbjct: 297 TLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYT----TEEAAGTALKEMNGKII 348



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
           E+ LR  F  FG +V V ++ DK + + +G+ F+E+   +       + N +I
Sbjct: 295 EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKI 347


>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
           putative 
          Length = 333

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
           E+ LRE  S +G I ++ +V    TG  RG+GFVE++    + R     +H + D
Sbjct: 77  EDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLID 131



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGR 165
           +L+E   ++G I ++ +++   T  S+G+GF+ Y     +  A  +  H  IDGR
Sbjct: 79  TLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGR 133


>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 451

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+  S    DI+ + L E+FS FG I    +  DK TG+ +GF    +   +   +  L+
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKK-ALE 286

Query: 414 QNHQIKDQHL 443
           + H+  + H+
Sbjct: 287 EPHKTFEGHV 296



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 168
           SL + ++Q+GEI D   + D  + +SKG+GFI +        A      KI  R+
Sbjct: 143 SLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRM 197



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 183
           L EF+ ++GEI +  +  D  T R KGF    Y       +A    PHK  +G ++   +
Sbjct: 243 LLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL-EEPHKTFEGHVLHCHK 301

Query: 184 A 186
           A
Sbjct: 302 A 302


>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
           nearly identical to SC35-like splicing factor SCL28, 28
           kD [Arabidopsis thaliana] GI:9843655; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 236

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
           D    DLR+ F  FG +  + +  +  TG+ RGFGFV++   +       + NH++
Sbjct: 57  DARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKV 112



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDG 162
           + L++ +E++G + D+ + ++  T   +GFGF+ Y  A    EA     HK+ G
Sbjct: 61  NDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIG 114


>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
           RNA Binding Protein 47 [Nicotiana plumbaginifolia]
           GI:9663769, DNA binding protein ACBF GB:AAC49850 from
           [Nicotiana tabacum]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 435

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           D+ +  L E FS  + ++ S  VV D  TG+ +G+GFV F D +   R   + N
Sbjct: 212 DVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMN 265



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           D+ +EDLR+ FS FG +VSV +   K      G GFV+F D
Sbjct: 331 DVIDEDLRQPFSQFGEVVSVKIPVGK------GCGFVQFAD 365



 Score = 35.5 bits (78), Expect = 0.035
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           ++E  L   FS  G + SV V+ +K T +  G+GFVEF
Sbjct: 119 MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEF 156



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 141
           L   +   GE+  V V+++  T +S+G+GF+ +      +E   N
Sbjct: 124 LHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--------NNRPHKIDGRIV 171
           F +++  +    V+ D  T RSKG+GF+ +   +    A         +NR  ++   I 
Sbjct: 222 FSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG--IA 279

Query: 172 EPKRAVPREE 201
            PKRA+  ++
Sbjct: 280 TPKRAIANQQ 289


>At1g07350.2 68414.m00784 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 129

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
           + E DL ++F+  G +  V +V D  T + RGFGF+        +R     +H +
Sbjct: 56  VTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSV 110



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 171
           L++ + + G++ DV ++ DP T+ S+GFGFI+       +    +  H +  GR++
Sbjct: 61  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116


>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
           contains similarity to polyadenylate-binding protein 5
          Length = 387

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 255 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           +Q ++E  +   F+  G   S  V+ +K TG+  G+GF+EF  +   +RV    N
Sbjct: 68  QQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYN 122



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 294 STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 425
           + +G++    VV D+ TG+ +G+GFV F D +   R   + N Q
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQ 219



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 108
           F   +G +    V+ D  T RSKG+GF+ ++
Sbjct: 174 FKNVYGSVKGAKVVLDRTTGRSKGYGFVRFA 204


>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           [Triticum aestivum] GI:1737492; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 101

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
           + EE L   FS FG ++  SV+     G+ RGF F+EF+  D   R  L  + ++  Q +
Sbjct: 28  VSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGFAFIEFESADSAGRAMLHMDGRLIGQKI 86


>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
           DNA binding protein ACBF - Nicotiana tabacum,
           PID:g1899188
          Length = 415

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 261 DIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 425
           D+ +  L E F + + ++    VV D+ TG+ +G+GFV F D     R   + N Q
Sbjct: 183 DVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ 238



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
           ++E  L   F   G   +  V+ +K+ G   G+GF+EF ++   +R
Sbjct: 91  MDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAER 136



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETG 347
           Q + E+DL+  F  FG +V V +   K  G
Sbjct: 287 QSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           +++ E  L+E F  FG ++ V +  D+     RG G+VEF
Sbjct: 107 RNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146



 Score = 35.1 bits (77), Expect = 0.047
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKR 183
           LKE +  +GE++ V +  D      +G G++ +      ++AQ      +IDG++V+   
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173

Query: 184 AV-PREEIKRP 213
            + PR+++  P
Sbjct: 174 TLPPRQKVSSP 184


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           +++ E  L+E F  FG ++ V +  D+     RG G+VEF
Sbjct: 107 RNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146



 Score = 35.1 bits (77), Expect = 0.047
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKR 183
           LKE +  +GE++ V +  D      +G G++ +      ++AQ      +IDG++V+   
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173

Query: 184 AV-PREEIKRP 213
            + PR+++  P
Sbjct: 174 TLPPRQKVSSP 184


>At5g65260.1 68418.m08209 polyadenylate-binding protein family
           protein / PABP family protein low similarity to
           poly(A)-binding protein II [Drosophila melanogaster]
           GI:6007612; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
           domain
          Length = 220

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/59 (28%), Positives = 34/59 (57%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
           E+++++F T G +  V+++TDK  G+ +GF +VEF + + V         ++  + L V
Sbjct: 106 EEVQQHFQTCGTVHRVTILTDK-FGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 163


>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GI:7673355 from [Nicotiana tabacum]; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 620

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +3

Query: 276 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH---LD 446
           D+ ++F+  G +VS+ ++ + E GK  G+GFVEF   D   +    +N +    H   +D
Sbjct: 259 DIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKALENKNGEYLHDHKIFID 317

Query: 447 VKK 455
           V K
Sbjct: 318 VAK 320


>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 441

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
           ++  +++L   F +FG ++S  V  DK TG  + FGFV +D
Sbjct: 358 REFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYD 398


>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
           protein similar to ssRNA-binding protein [Dictyostelium
           discoideum] GI:1546894; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 245

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           ++ C     ++ ++ L + F+ F       V+ DK TGK +G+GFV F
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185


>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
           identical to UBP1 interacting protein 1a [Arabidopsis
           thaliana] GI:19574236; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM); based on cDNA of partial mRNA for UBP1
           interacting protein 1a (uba1a) GI:19574235
          Length = 347

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           E L   F  +G I   +VV DK TGK +GFGFV F
Sbjct: 118 ETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 19  YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           +E +GEI +  V+ D  T ++KGFGF+ +       EA      +I  R
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172


>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
           identical to UBP1 interacting protein 1a [Arabidopsis
           thaliana] GI:19574236; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM); based on cDNA of partial mRNA for UBP1
           interacting protein 1a (uba1a) GI:19574235
          Length = 343

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           E L   F  +G I   +VV DK TGK +GFGFV F
Sbjct: 118 ETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 19  YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           +E +GEI +  V+ D  T ++KGFGF+ +       EA      +I  R
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172


>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
           SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 537

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD-DYDPVDRVCLQQNHQIKDQHLDVKK 455
           L   F  FG+I+S  VV  +E G+ +GFGFV+FD +   V          +  + L V K
Sbjct: 128 LERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAK 185

Query: 456 AISKTD 473
            I+K +
Sbjct: 186 FINKDE 191



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           + + E  LRE F  +G IVS  V+   E G+ +GFGFV F +
Sbjct: 313 ESMNETRLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCFSN 353



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQ-NHQIKD 434
           + + ++ L   FS +G + SV V+ D   G+ RGFGFV F + +   +        Q+  
Sbjct: 211 ETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESLCGLQLGS 269

Query: 435 QHLDVKKAISKTD 473
           + L V KA+ K +
Sbjct: 270 KKLFVGKALKKDE 282



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 183
           L+E +  +G+IV   VM   +  RSKGFGF+ +S      +A+       +DG+ +  + 
Sbjct: 320 LREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRV 378

Query: 184 AVPREE-IKR 210
           A  +E+ IKR
Sbjct: 379 AERKEDRIKR 388



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 422
           D+ E+DL + FS    +VSV +  +  TGK   + ++ FD          + NH
Sbjct: 31  DVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNH 84



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L   + Q+G +  VVVM+D    RS+GFGF+ +       +A  +    + G  +  K+ 
Sbjct: 218 LHTLFSQYGTVSSVVVMRDGMG-RSRGFGFVNFCNPENAKKAMES----LCGLQLGSKKL 272

Query: 187 VPREEIKRPEASATVKKLF 243
              + +K+ E    +K+ F
Sbjct: 273 FVGKALKKDERREMLKQKF 291


>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
           similar to GB:CAB75429 (GI:6996560) from [Nicotiana
           plumbaginifolia], contains Pfam profiles: PF00076 RNA
           recognition motif (3 copies)
          Length = 427

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           ++ +  L + FS F +     V+ D++TG+ RGFGFV F
Sbjct: 154 EVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
           ++L + +  +    D  VM D KT RS+GFGF+++        A N
Sbjct: 158 ATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +1

Query: 52  VMKDPKTKRSKGFGFITYS---QAHMVDEAQNNRPHKIDGRI 168
           V+++ + +R KGFGF+ Y+   +A +  +  N +P+  + +I
Sbjct: 292 VIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQI 333


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
           I+ + L E FS+FG I+S  V  D   G+ +G+GFV+F+
Sbjct: 143 IDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFE 180



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 165
           LKE + ++G +    VM + +   S+GFGF+ YS       A      K+ GR
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEMNGKMIGR 395



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           LK+ + ++G+I   VVMKD ++  S+ FGF+ +
Sbjct: 241 LKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNF 272


>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           LK+ +   GE+ +V ++K+P+TK+SKG  F+ ++       A
Sbjct: 230 LKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271


>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           29 kDa ribonucleoprotein chloroplast precursor
           {Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) contains an AG-donor site at
           intron.
          Length = 258

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +3

Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
           SWT   +  E L   F   G++V   VV D +TG+ RG+GFV
Sbjct: 185 SWT---VTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223



 Score = 35.1 bits (77), Expect = 0.047
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIV 171
           SL   + + G++V   V+ D  T RS+G+GF+ Y S+A M    ++    +++GR +
Sbjct: 192 SLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAI 248



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
           +++   L +    F N   V V+ +++TG+ RGF FV   + +
Sbjct: 95  NVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVE 137


>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
           PABP, putative contains similarity to poly(A)-binding
           protein II [Mus musculus] GI:2351846; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 227

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 15/59 (25%), Positives = 35/59 (59%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
           E+++++F + G +  V+++TDK  G+ +GF +VEF + + V    +    ++  + + V
Sbjct: 117 EEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKV 174


>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
           protein low similarity to heterogeneous nuclear
           ribonucleoprotein G [Mus musculus] GI:5579009; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 152

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---QAHMVDEAQNNRPHKIDGRIV 171
           LK  +  +GEI +V ++KD   KRSKG+ FI ++    A +  E  + R +  +GR++
Sbjct: 56  LKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMY--NGRMI 111


>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
           protein similar to chloroplast RNA-binding protein cp33
           [Arabidopsis thaliana] GI:681912; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 253

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           L+  + + G++V   V + P T +S GFGF+T+S    V+ A
Sbjct: 193 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234


>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 426

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           ++ +  L + FS F +     V+ D++TG+ RGFGFV F
Sbjct: 158 EVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSF 196



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
           ++L + +  +    D  VM D KT RS+GFGF+++        A N
Sbjct: 162 AALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207


>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +3

Query: 237 VVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQ 416
           ++ S   ++ +EED+   F  FG I ++++  D+ +G  +G+  +E++  +         
Sbjct: 97  ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156

Query: 417 N-HQIKDQHLDVKKAIS 464
           N  ++  Q++ V  A S
Sbjct: 157 NGAELLTQNVSVDWAFS 173


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFS-TFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           D+ +  L E F+  + ++    VV D  TG+ +G+GFV F D +   R   + N
Sbjct: 223 DVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMN 276



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           D+ EEDL + FS FG +VSV +   K      G GFV+F
Sbjct: 337 DVTEEDLMQPFSDFGEVVSVKIPVGK------GCGFVQF 369



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           ++E  L   FS    + SV V+ +K+T +  G+GFVEF
Sbjct: 130 MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEF 167


>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
           protein
          Length = 116

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIV 171
           +L + + Q+G+++ V V+ D    R KGF ++T+S     ++A        +DGR+V
Sbjct: 36  TLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92


>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 168
           +L E ++Q+GEI D   + D  + +SKG+GFI Y        A      KI  R+
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209



 Score = 34.7 bits (76), Expect = 0.062
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
           D + E L E F  +G I     V DK +GK +G+GF+
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+  S    +++ + L  +FS FG I    +  DK TG+ +GF    +   +   R  L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALE 304

Query: 414 QNHQIKDQH-LDVKKAI 461
           + H+  + H L  +KAI
Sbjct: 305 EPHKTFEGHILHCQKAI 321



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 189
           F+ ++GEI +  +  D  T R KGF    Y  +     A    PHK  +G I+  ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321


>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 168
           +L E ++Q+GEI D   + D  + +SKG+GFI Y        A      KI  R+
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209



 Score = 34.7 bits (76), Expect = 0.062
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
           D + E L E F  +G I     V DK +GK +G+GF+
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+  S    +++ + L  +FS FG I    +  DK TG+ +GF    +   +   R  L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALE 304

Query: 414 QNHQIKDQH-LDVKKAI 461
           + H+  + H L  +KAI
Sbjct: 305 EPHKTFEGHILHCQKAI 321



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 189
           F+ ++GEI +  +  D  T R KGF    Y  +     A    PHK  +G I+  ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321


>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 168
           +L E ++Q+GEI D   + D  + +SKG+GFI Y        A      KI  R+
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209



 Score = 34.7 bits (76), Expect = 0.062
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
           D + E L E F  +G I     V DK +GK +G+GF+
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           K+  S    +++ + L  +FS FG I    +  DK TG+ +GF    +   +   R  L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALE 304

Query: 414 QNHQIKDQH-LDVKKAI 461
           + H+  + H L  +KAI
Sbjct: 305 EPHKTFEGHILHCQKAI 321



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAV 189
           F+ ++GEI +  +  D  T R KGF    Y  +     A    PHK  +G I+  ++A+
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL-EEPHKTFEGHILHCQKAI 321


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 371
           +   D+   FSTFG +  V+V+ D+ T + RG  FV
Sbjct: 68  LTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFV 103



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           S +   +  +G++  V V+KD  T++S+G  F+ Y      D A+  R   +D +I+  +
Sbjct: 71  SDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSRE--DAAKAAR--SMDAKILNGR 126

Query: 181 RAVPREEIKRPEASATVKK 237
           +           AS  +KK
Sbjct: 127 KLTVSIAADNGRASEFIKK 145


>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 126

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
           + E  L++ FS FG + +V ++ ++ T +  G+G+V F+  +         N ++
Sbjct: 69  VSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123


>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 172

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
           + E  L++ FS FG + +V ++ ++ T +  G+G+V F+  +         N +  D
Sbjct: 88  VSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFD 144


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQ 437
           DI E ++ + FS +G +V + +   K   +  G+ FVEF+D  D  D +  +  +     
Sbjct: 17  DIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGH 73

Query: 438 HLDVKKA 458
           HL V+ A
Sbjct: 74  HLRVELA 80


>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 178

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQ 437
           DI E ++ + FS +G +V + +   K   +  G+ FVEF+D  D  D +  +  +     
Sbjct: 17  DIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGH 73

Query: 438 HLDVKKA 458
           HL V+ A
Sbjct: 74  HLRVELA 80


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
           EEDL +  + +G +  V V+ ++ +G  RGF F++F   D
Sbjct: 311 EEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVD 350



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           +D +EE LR  FS    I  + +V DK T   RGF FV F
Sbjct: 467 EDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHF 506


>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM), PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 540

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLD 446
           EED+  YFSTFG +  V +       +KR FGFV F   + V  +  + N H + D  + 
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327

Query: 447 VK 452
           VK
Sbjct: 328 VK 329


>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 427

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           E  ++  F ++G I  V +VTD+ T K +G+ F+E+
Sbjct: 151 ESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186


>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 674

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           ++ L  +F+ FG ++   +VTD  TG+  G  ++EF
Sbjct: 529 KDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           SL   + ++GE++   ++ DP T +  G  +I +++    + A
Sbjct: 531 SLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENA 573


>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
           sativus] GI:7528270; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 497

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +3

Query: 255 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKD 434
           +  I+  D+  +F   G +V V ++ + + GK  G+GFVEF   +  ++  ++    + +
Sbjct: 255 RDSIQISDIINFFKDVGEVVHVRLIVNSQ-GKHAGWGFVEFASANEAEKALVKNGEYLHN 313

Query: 435 QHLDVKKA 458
             + +  A
Sbjct: 314 YKISLDGA 321



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           ++ +F+    +VSV +V + E GK  G+GFVEF      ++   ++N +    H
Sbjct: 174 IKGFFNGVAQVVSVRLVVNHE-GKHVGYGFVEFASAYGANKALEEKNGEYLHNH 226


>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
           protein similar to SP|Q14011 Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) {Homo
           sapiens}; contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 157

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 24/62 (38%), Positives = 34/62 (54%)
 Frame = +1

Query: 52  VMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATV 231
           ++KD +T+R KGFGFIT+      D+AQ      ++G+IV   R +  E  K  EA  T 
Sbjct: 97  LIKDQQTQRPKGFGFITFESE---DDAQ-KALKALNGKIVN-GRLIFVETAKEVEAPTTS 151

Query: 232 KK 237
            K
Sbjct: 152 LK 153



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
           ++ LR+ F+ F  ++      D++T + +GFGF+ F+  D   +     N +I +  L
Sbjct: 84  DQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRL 136


>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 439

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
           ++  +++L   F +FG ++S  V  DK TG  + FG + FD
Sbjct: 357 REFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397


>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           E D+R+ F  +GN+  + +  DK TG++  + F+++
Sbjct: 123 EYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKY 158


>At5g10350.2 68418.m01201 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 202

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
           E+++ +F T G +  V+++ DK  G+ +GF +VEF + + V         ++  + L V
Sbjct: 103 EEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160


>At5g10350.1 68418.m01200 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 217

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
           E+++ +F T G +  V+++ DK  G+ +GF +VEF + + V         ++  + L V
Sbjct: 103 EEVQLHFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQ 437
           DI E ++ + FS +G +V + +   K   +  G+ FVEFDD  D  D +  +  +     
Sbjct: 17  DIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGH 73

Query: 438 HLDVKKA 458
            L V+ A
Sbjct: 74  RLRVELA 80


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQ 437
           DI E ++ + FS +G +V + +   K   +  G+ FVEFDD  D  D +  +  +     
Sbjct: 17  DIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGH 73

Query: 438 HLDVKKA 458
            L V+ A
Sbjct: 74  RLRVELA 80


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD-YDPVDRVCLQQNHQIKDQ 437
           DI E ++ + FS +G +V + +   K   +  G+ FVEFDD  D  D +  +  +     
Sbjct: 17  DIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGH 73

Query: 438 HLDVKKA 458
            L V+ A
Sbjct: 74  RLRVELA 80


>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 552

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHL 443
           ++ED+  YFS FG +  V +       +KR FGFV F   + V  V  + N H I D  +
Sbjct: 272 KDEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRV 327

Query: 444 DVK 452
            VK
Sbjct: 328 LVK 330


>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 10  KEFYEQWGEIVDVVVMKDP-KTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           +EF+ Q+G I +V+++K   + +++ GFGFI Y+      +A      +  GRI+  K
Sbjct: 182 EEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239


>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
           protein similar to nucleolin protein; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 495

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ-AHMVDEAQNNRPHKIDGRIVEPKR 183
           LKE +++ GE+  +V       KR   FGF+ Y++ +  +   ++   ++++G+ +E   
Sbjct: 308 LKELFQRHGEVTKIVTPPGKGGKRD--FGFVHYAERSSALKAVKDTERYEVNGQPLEVVL 365

Query: 184 AVPREEIKRPEAS 222
           A P+ E K   +S
Sbjct: 366 AKPQAERKHDPSS 378



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           L++  E+ GEI +V +MKD  +  SKG+ F+ +    +  +A
Sbjct: 132 LRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYDPVDRVCLQQNHQIKD 434
           ++   E L+E F   G +  +  VT    G KR FGFV + +    +  V   + +++  
Sbjct: 301 ENTSTEQLKELFQRHGEVTKI--VTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNG 358

Query: 435 QHLDV 449
           Q L+V
Sbjct: 359 QPLEV 363


>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 399

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           EED+ +YFSTFG +  V +       +KR FGFV F
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTF 200


>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 177

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEP 177
           S L   +  +G+I DV    D   ++ + FGF+T+ +      A +N    ++ GR++  
Sbjct: 27  SILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTV 86

Query: 178 KRAVPREEIKRPE 216
             A+P E+IK  E
Sbjct: 87  NYALP-EKIKGGE 98



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           ++ E  L   F  FG+I  V    D+   K R FGFV F
Sbjct: 23  EVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61


>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
           protein low similarity to poly(A) binding protein II
           from [Xenopus laevis] GI:11527140, [Mus musculus]
           GI:2351846, [Bos taurus] GI:1051125; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) domain
          Length = 537

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           F  + G + +V+V+ DP T+  KG  F+T++    V +A
Sbjct: 464 FSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKA 502


>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein [Nicotiana
           plumbaginifolia] GI:6996560; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 419

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 291 FSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           FS +       V+ D++TG+ RGFGFV F
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSF 187



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 43  DVVVMKDPKTKRSKGFGFITY 105
           D  VM D KT RS+GFGF+++
Sbjct: 167 DARVMWDQKTGRSRGFGFVSF 187


>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
            family protein
          Length = 1493

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 616  WGNQNPWDDNGGGNWSNQGYGDQGNWGSFGSG 711
            WG QN  D  GG +W  QG G    W     G
Sbjct: 1302 WGKQN--DGGGGSSWGKQGDGGSKPWNEHSGG 1331



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 616  WGNQNPWDDNGGGNWSNQ-GYGDQGNWGSFGSG 711
            WG QN  D  GG +W  Q G G   +WG    G
Sbjct: 1278 WGKQN--DSGGGSSWGKQDGGGGGSSWGKQNDG 1308



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 616  WGNQNPWDDNGGGNWSNQGYGDQG-NWGSFGSG 711
            WG QN  D  GG +W  Q  G  G +WG    G
Sbjct: 1180 WGKQN--DAGGGSSWGKQDSGGDGSSWGKQDGG 1210



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 616  WGNQNPWDDNGGGNWSNQGYGDQGNWGSFGSG 711
            WG +N  D  GG +W  Q  G   +WG    G
Sbjct: 1144 WGKEN--DAGGGSSWGKQDNGVGSSWGKQNDG 1173



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 616  WGNQNPWDDNGGGNWSNQG-YGDQGNWGSFGSG 711
            WG QN     GG +W  Q   G   +WG   SG
Sbjct: 1167 WGKQND-GSGGGSSWGKQNDAGGGSSWGKQDSG 1198


>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 173

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 303 GNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTD 473
           G ++ + +  DKET K +GF F E++  +  D      +  +   +  +K AIS  D
Sbjct: 31  GRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLFSGLVSLYNRTLKFAISGQD 87



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 25  QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           Q G ++D+ + +D +T + KGF F  Y    + D A
Sbjct: 29  QAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64


>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
           protein low similarity to glycine-rich RNA-binding
           protein [Euphorbia esula] GI:2645699; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 337

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 171
           +++  +  +G ++ V ++ D ++ R K +GF+T+S     D+A  +   K I GR V
Sbjct: 22  AVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAV 77


>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
           profile: PF01722 BolA-like protein
          Length = 93

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +2

Query: 74  RDQKDLDLLHILKPIWLMKLKIIGLTKLTEELSSQSEQFQGKRLKDQ 214
           ++Q +  L   LKPI L  + I G    + E+   SEQF+GKRL ++
Sbjct: 4   KEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLER 50


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
           D  E D+R+ FS    I SV +  +KETG+ +G+  V+F D   V  + L+ + Q+
Sbjct: 272 DTTERDIRKLFSDCV-INSVRLGKNKETGEFKGYAHVDFKDSVSV-AIALKLDQQV 325


>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
           protein RNA-binding protein LAH1, Saccharomyces
           cerevisiae, PIR2:B48600; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 433

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 237 VVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTD-KETGKKRGFGFVEFDDYDPVDRVCLQ 413
           V  S    D++ ED+  +FS +G + SV +     E+    G   VEF   +    V ++
Sbjct: 118 VAASPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNV-MK 176

Query: 414 QNHQIKDQHLDVK 452
           QN     Q L++K
Sbjct: 177 QNLVFAGQELELK 189


>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
           protein heterogeneous nuclear ribonucleoprotein R, Homo
           sapiens, PIR:T02673; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 471

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           LK F    GE+ +V +M++  +   KG+ F+T+    +  EA
Sbjct: 108 LKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ-QNHQIKD 434
           +DI +E L+  F   G I+ V +   K   +   +GFV + +   V R     + ++I  
Sbjct: 277 RDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDG 336

Query: 435 QHLDVKKAISKTD 473
             LD   A  + D
Sbjct: 337 HMLDCTLAKPQAD 349


>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 430

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVS----VSVVTDKETGKKRGFGFVEF 377
           ++ +  L + FS F +  S      V+ D++TG+ RGFGFV F
Sbjct: 158 EVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 43  DVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 138
           D  VM D KT RS+GFGF+++        A N
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 211


>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
           protein KIAA0332 - Homo sapiens, EMBL:AB002330
          Length = 946

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVV---TDKETGKKRGFGFVEF 377
           ++E  L   F  FG I SV ++   TD+E  ++R  GFV F
Sbjct: 190 VDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230


>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative similar to
           spliceosomal protein [Solanum tuberosum] GI:169589
          Length = 232

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----AHMVDEAQN 138
           SL   + Q+G I+DVV +K PK    +G  ++T+S+     H V + QN
Sbjct: 29  SLYCLFSQFGRILDVVALKTPKL---RGQAWVTFSEVTAAGHAVRQMQN 74


>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
           protein low similarity to enhancer binding protein-1;
           EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
           kDa ribonucleoprotein, chloroplast precursor (28RNP)
           {Nicotiana sylvestris}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 304

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 279 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEF 377
           L+E+F    GN+VS  V+  +   +  G+GFV F
Sbjct: 205 LKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSF 238


>At1g75550.1 68414.m08780 glycine-rich protein 
          Length = 167

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 607 RWHWGNQNPWDDNGGGNWSNQGYGDQGNWGSFGSG 711
           RW WG        GGG     G G  G WG  G G
Sbjct: 66  RWGWGGGGGGGGGGGGGGGGGG-GGGGGWGWGGGG 99


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 637 DDNGGGNWSNQGYGDQG-NWGSFGSGY 714
           +D GG   +N GYG +G  +G  GSGY
Sbjct: 53  NDRGGYGGANSGYGGRGQGYGGRGSGY 79


>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
           protein contains Pfam profile:PF00076 RNA recognition
           motif
          Length = 602

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLD 446
           +ED+  YF  FG +  V +       +KR FGFV F   + V  +  + N H I D  + 
Sbjct: 332 DEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRVL 387

Query: 447 VK 452
           VK
Sbjct: 388 VK 389


>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
           transport factor 2 (NTF2) domain
          Length = 1294

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/62 (24%), Positives = 35/62 (56%)
 Frame = +3

Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKA 458
           + +    FG I ++S++   ++G    F FV+F+  D  +R  +    +I +++++V+K 
Sbjct: 761 IEDALKKFGPINAISII---KSGPLYKFAFVDFEKADVANRAIMASPVRICEKNVNVQKK 817

Query: 459 IS 464
           +S
Sbjct: 818 LS 819


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 276 DLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           D++  FS  G +  V +  + ETG  +GF FV+F
Sbjct: 346 DIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379


>At1g65440.1 68414.m07424 glycine-rich protein 
          Length = 1647

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 12/44 (27%)
 Frame = +1

Query: 616  WGNQNP------WDDNGGGNWSNQ------GYGDQGNWGSFGSG 711
            WGN +       W ++GGG W ++      G G  G WGS   G
Sbjct: 1511 WGNNDTGTADGGWGNSGGGGWGSESAGKKTGGGSTGGWGSESGG 1554


>At5g13655.1 68418.m01588 hypothetical protein
          Length = 395

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 159
           L ++ ++W +I+ ++  KD  T +S   G++  +  H +   +++R H  D
Sbjct: 301 LDKYSDRWQDIILMLTRKDFDTTKSFILGYVLQNSIHSIWRERDDRRHGED 351


>At4g35785.2 68417.m05083 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 141

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 108
           L+  + + G++    ++ +P+T+ S+GF F+T S
Sbjct: 88  LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 121


>At4g35785.1 68417.m05082 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 140

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 108
           L+  + + G++    ++ +P+T+ S+GF F+T S
Sbjct: 87  LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120


>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
           GI:1279563 from [Medicago sativa]
          Length = 335

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           L +YFS+FG I  V V     TG   G+ +++  +
Sbjct: 254 LSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKE 288


>At1g41855.1 68414.m04833 hypothetical protein
          Length = 261

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 64  PKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVP 192
           P+ K  KGFG +    + + +E++N +PH +  GR+     + P
Sbjct: 13  PELKNVKGFGDLELLASKLEEESRNQKPHTRPPGRVHPAPHSTP 56


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 246 SWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKK 353
           +WT++     DLR  FS  GN+V   VV+  ETG K
Sbjct: 308 AWTERVEAARDLR--FSFDGNVVEEDVVSPAETGGK 341


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 31  GEIVDVVVMKDPKTKRSKGFGFITYSQA 114
           G +   +  +DP TK+ KGFGF  +  A
Sbjct: 227 GHVKSCLRAEDPTTKKPKGFGFYEFESA 254



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
           +E + +       G++ S     D  T K +GFGF EF+  + + R
Sbjct: 214 VENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILR 259


>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -2

Query: 694 PNYPGLHSPD*TSFRHHYRPKDFDSPSATLTVSLPLVKTTILISPL 557
           P   G   P    F H Y    F +P A+ T SL   K  +LIS +
Sbjct: 313 PFTSGDGKPQHNDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDM 358


>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
           protein 
          Length = 710

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 395
           + +L      +G +  V    +K +GK +G+  VEF  YDPV
Sbjct: 247 DAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF--YDPV 286


>At2g15770.1 68415.m01808 glycine-rich protein contains a domain
           related to blue copper-binding protein; similar to
           Stellacyanin (SP:P00302) {Rhus vernicifera}
          Length = 301

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 604 SRWHWGNQNPWDDNGGGNWSNQGYGDQGNWGS 699
           S W WG+    D++G G  SN   G    WG+
Sbjct: 59  SSWSWGSD---DNSGSGLGSNSNNGSGWGWGT 87


>At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to
           SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
          Length = 186

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 646 GGGNWSNQGYGDQG-NWGSFGSGY 714
           GGG    QGYG  G  +GS G GY
Sbjct: 41  GGGATGGQGYGTGGQGYGSGGQGY 64


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 616 WGNQNPWDDNGGGNWSNQGYGDQG--NWGSFG-SGY 714
           WG  +     G G + + GYG +G   +GS G SGY
Sbjct: 620 WGTPSSGGGGGRGGYGDSGYGGRGESGYGSRGDSGY 655


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,163,941
Number of Sequences: 28952
Number of extensions: 272353
Number of successful extensions: 1538
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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