Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0025.Seq
(782 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76965.1 68414.m08961 glycine-rich protein 30 1.5
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative... 30 2.0
At1g50260.1 68414.m05635 C2 domain-containing protein low simila... 30 2.0
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 4.6
At5g42370.1 68418.m05159 expressed protein 29 4.6
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s... 29 4.6
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 4.6
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 29 4.6
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 29 4.6
At5g16970.1 68418.m01988 NADP-dependent oxidoreductase, putative... 28 6.1
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 6.1
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 6.1
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 6.1
At5g61910.3 68418.m07772 expressed protein 28 8.0
At5g61910.2 68418.m07771 expressed protein 28 8.0
At5g61910.1 68418.m07770 expressed protein 28 8.0
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 454 PGTGCIRFPSKPDTPRSSEPILIPKLRIQFAD 359
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 239
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 585 RVRIQSET*DDFRECHIKYIQFLRPHI 505
R+RIQ DF + + K+++FL PHI
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPHI 198
>At1g50260.1 68414.m05635 C2 domain-containing protein low
similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
contains Pfam profile PF00168: C2 domain
Length = 675
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 578 RTRVLRPSADLPSRKVVSVSFRARSARXCTTAVQRSAQN 694
R+RVLRPS + + + +S FR S T R A N
Sbjct: 37 RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 241 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 107
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 180 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 70
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 534
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 513 ASKTVYI*YDTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHXSVRPPF 677
ASK + I Y RENR+ ++ G+ GL R + V+ C + + D P F
Sbjct: 154 ASKGINIRYQIRENRVGYKAGA--LKEGLKRSY--VKHCEYVVIFDADFQPEPDF 204
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 43 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 174
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 463 STRPGTGCIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 344
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 463 STRPGTGCIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 344
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At5g16970.1 68418.m01988 NADP-dependent oxidoreductase, putative
(P1) identical to probable NADP-dependent oxidoreductase
P1, zeta-crystallin homolog [SP|Q39172][gi:886428],
Arabidopsis thaliana; similar to allyl alcohol
dehydrogenase [Nicotiana tabacum] GI:6692816; contains
Pfam profile PF00107: oxidoreductase, zinc-binding
dehydrogenase family
Length = 345
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 585 RVRIQSET*DDFRECHIKYIQFLRPHI 505
R+RIQ DF + + K+++F+ PHI
Sbjct: 278 RIRIQGFVVSDFYDKYSKFLEFVLPHI 304
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 236 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 138
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 377 TDPICRLPLPTLFYRLEALHLGDLLRIWIRTGATSPRTSLTEFSMSAESI 228
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 377 TDPICRLPLPTLFYRLEALHLGDLLRIWIRTGATSPRTSLTEFSMSAESI 228
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At5g61910.3 68418.m07772 expressed protein
Length = 742
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 272 PRTSLTEFS-MSAESIRTPPQMRCSSRSEPYLPS 174
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 253 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 286
>At5g61910.2 68418.m07771 expressed protein
Length = 738
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 272 PRTSLTEFS-MSAESIRTPPQMRCSSRSEPYLPS 174
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 249 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 282
>At5g61910.1 68418.m07770 expressed protein
Length = 738
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 272 PRTSLTEFS-MSAESIRTPPQMRCSSRSEPYLPS 174
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 249 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,195,454
Number of Sequences: 28952
Number of extensions: 401489
Number of successful extensions: 1159
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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