Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C12f
(316 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 82 7e-17
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 82 7e-17
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 81 2e-16
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 81 2e-16
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 80 3e-16
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 80 4e-16
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 38 0.001
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 28 1.5
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor... 27 2.0
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 2.6
At1g29120.2 68414.m03565 expressed protein 27 3.5
At1g29120.1 68414.m03564 expressed protein 27 3.5
At1g09575.1 68414.m01074 expressed protein contains Pfam domain,... 26 4.6
At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei... 26 6.1
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative... 26 6.1
At1g32600.1 68414.m04023 F-box family protein-related contains T... 26 6.1
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 25 8.1
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu... 25 8.1
At2g31160.1 68415.m03804 expressed protein contains Pfam profile... 25 8.1
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 82.2 bits (194), Expect = 7e-17
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 215 TNIGSGVGAAPA 250
N+G+G G A
Sbjct: 61 MNVGAGGGGGGA 72
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 82.2 bits (194), Expect = 7e-17
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 215 TNIGSGVGAAPA 250
N+G+G G A
Sbjct: 61 MNVGAGGGGGGA 72
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 80.6 bits (190), Expect = 2e-16
Identities = 36/68 (52%), Positives = 49/68 (72%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 215 TNIGSGVG 238
N+G+G G
Sbjct: 61 MNVGAGGG 68
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 80.6 bits (190), Expect = 2e-16
Identities = 36/68 (52%), Positives = 49/68 (72%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 215 TNIGSGVG 238
N+G+G G
Sbjct: 61 MNVGAGGG 68
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 80.2 bits (189), Expect = 3e-16
Identities = 36/68 (52%), Positives = 49/68 (72%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 215 TNIGSGVG 238
N+G+G G
Sbjct: 61 MNVGAGGG 68
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 79.8 bits (188), Expect = 4e-16
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +2
Query: 38 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 217
+S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI
Sbjct: 1 MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60
Query: 218 NIGSG 232
N+G+G
Sbjct: 61 NVGAG 65
>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
contains weak similarity to Swiss-Prot:52855 60S acidic
ribosomal protein P1 (L12) [Zea mays]
Length = 46
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +2
Query: 38 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 172
++ ELAC Y+AL+L D VT +ST++K A +++E YWP L
Sbjct: 1 MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 186 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 79
+ +N P + S TAA KM +I SP+T +S R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317
>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative similar to SP|P161127 from Arabidopsis
thaliana, SP|P93162 from Glycine max, SP|O22436 from
Nicotiana tabacum; non-consensus AA donor splice site at
exon 1, TG acceptor splice site at exon 2
Length = 418
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 32 KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 196
K+ EL+ + + + +VD + T +++ I KA V+ + PGL AKA GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/78 (19%), Positives = 34/78 (43%)
Frame = +2
Query: 2 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 181
G +++ K +++ ++ ++ V + V G+ + T A ++ P W +
Sbjct: 203 GPQKVKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPEWIAIVGS 262
Query: 182 ALEGINVRDLITNIGSGV 235
G+ D+ T +GS V
Sbjct: 263 GYIGLEFSDVYTALGSEV 280
>At1g29120.2 68414.m03565 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 14 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 157
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
>At1g29120.1 68414.m03564 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 14 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 157
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
>At1g09575.1 68414.m01074 expressed protein contains Pfam domain,
PF04678: Protein of unknown function, DUF607
Length = 292
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 223 DVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDE 74
DV T ++A QG G P ++++R D G L + +H D+
Sbjct: 78 DVVSYSTLLEASQGMGIARSPDEAHVFARVLDDAGVVLIFRDKVYLHPDK 127
>At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein
contains Pfam profiles: PF02538 hydantoinase
B/oxoprolinase, PF01968 hydantoinase/oxoprolinase,
PF05378 hydantoinase/oxoprolinase N-terminal region
Length = 1266
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 175 EQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 68
EQ +P+ L+ + R GGN L G+ ++ + E R
Sbjct: 1161 EQRYPVLLHRFGLRENSGGNGLHKGGDGLVREIEFR 1196
>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
similar to glucose-6-phosphate isomerase [Spinacia
oleracea] GI:3413511; contains Pfam profile PF00342:
glucose-6-phosphate isomerase
Length = 613
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 167 GLFAKALEGINVRDLIT 217
GL AL+GINVR+++T
Sbjct: 316 GLLPAALQGINVREMLT 332
>At1g32600.1 68414.m04023 F-box family protein-related contains
TIGRFAM TIGR01640 : F-box protein interaction domain;
identical to hypothetical protein GB:AAF25964 GI:6714268
from [Arabidopsis thaliana]
Length = 293
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 38 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 205
VS+ EL CV + VDD++ V +I + K A D +P W + E +++R
Sbjct: 186 VSRGEL-CVINHYPSVDDNLCVCRREIRSGKKIARWDSDP-WMNVAGNDDEPVDIR 239
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 232 SRADVGDQVTDIDAFQGFG--EQTWPIWLYIYSRRFQDGGN 116
SRA+ GD++ + D F G E I+ + R + GGN
Sbjct: 163 SRANTGDELDEFDLFSSVGGMELDGDIFSSVSHRNGERGGN 203
>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mutase
family protein similar to X4 protein GI:21386798, Y4
protein GI:21386800 from [Silene dioica]; contains Pfam
profiles PF00300: phosphoglycerate mutase family,
PF01535: PPR repeat
Length = 1053
Score = 25.4 bits (53), Expect = 8.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 112 ENFHHLESGGCRC 150
+ FHH + GGC C
Sbjct: 1037 KRFHHFKDGGCSC 1049
>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 219
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 210 RSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE 67
++R + K RP STS+++A + F + TSS+T+++ E
Sbjct: 171 KARGVSYEKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTSSTTQLKFE 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,606,834
Number of Sequences: 28952
Number of extensions: 133797
Number of successful extensions: 358
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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