Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C09f
         (315 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolas...    31   0.16 
At5g56110.1 68418.m07000 myb family transcription factor contain...    30   0.37 
At4g16210.1 68417.m02460 enoyl-CoA hydratase/isomerase family pr...    28   1.1  
At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolas...    27   2.0  
At3g42460.1 68416.m04398 hypothetical protein several hypothetic...    27   3.5  
At5g33280.1 68418.m03944 chloride channel-like (CLC) protein, pu...    26   4.6  
At3g24360.1 68416.m03058 enoyl-CoA hydratase/isomerase family pr...    26   4.6  
At4g31810.1 68417.m04521 enoyl-CoA hydratase/isomerase family pr...    26   6.1  
At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolas...    26   6.1  
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con...    25   8.1  

>At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolase,
           putative / CoA-thioester hydrolase, putative strong
           similarity to gi:8572760; contains Pfam profile PF00388
           enoyl-CoA hydratase/isomerase family protein
          Length = 378

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 226 VVGSKKNVGLIQLNRPKALNALC 294
           +V  K +V ++ LNRPK LNALC
Sbjct: 8   LVEEKSSVRILTLNRPKQLNALC 30


>At5g56110.1 68418.m07000 myb family transcription factor contains
           PFAM profile: Myb DNA binding domain PF00249
          Length = 320

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 122 CWERMY*TSAKWYPQQAKHL*SFIAQHHTRTSRL 223
           C E+      +W P++   L S+IAQH TR  RL
Sbjct: 6   CCEKENVKRGQWTPEEDNKLASYIAQHGTRNWRL 39


>At4g16210.1 68417.m02460 enoyl-CoA hydratase/isomerase family
           protein similar to 3-hydroxybutyryl-CoA dehydratase
           (Crotonase) from Clostridium acetobutylicum [SP|P52046],
           FadB1x (enoyl-CoA hydratase) from Pseudomonas putida
           [GI:13310130]; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 265

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 208 ENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFXEL 315
           EN+ ++V      + +I +NRPK+LN+L + +  +L
Sbjct: 7   ENL-IQVKKESGGIAVITINRPKSLNSLTRAMMVDL 41


>At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolase /
           CoA-thioester hydrolase (CHY1) identical to gi:8572760;
           contains Pfam profile PF00388 enoyl-CoA
           hydratase/isomerase family protein
          Length = 378

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 226 VVGSKKNVGLIQLNRPKALNAL 291
           +V  K +V ++ LNRPK LNAL
Sbjct: 12  LVEEKSSVRILTLNRPKQLNAL 33


>At3g42460.1 68416.m04398 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 202

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 112 TRALLGKNVLNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQL 264
           T A  G N+++K  V S      IKF +  S++NI   + G+ +N  L+ L
Sbjct: 61  TSAEYGINLMDKTVVTSGDPNTPIKFNNFTSFDNI---LEGTFENDQLVDL 108


>At5g33280.1 68418.m03944 chloride channel-like (CLC) protein,
           putative similar to CLC-c, At5g49890 [Arabidopsis
           thaliana] and chloride channel protein ClC-1 - Nicotiana
           tabacum, PIR:T02939
          Length = 763

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 73  WFIFLKMASVATVTRALLGKNVLNKCKVVSATSQASIKFYS-TASY 207
           W IF   A VA V RAL+   +  KC +           YS  ASY
Sbjct: 263 WRIFFSTAVVAIVLRALIDVCLSGKCGLFGKGGLIMFDVYSENASY 308


>At3g24360.1 68416.m03058 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 418

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 157 VSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNAL 291
           +S + +      ++ S E +K  V  +   V LI L+RPKALNA+
Sbjct: 28  LSVSHRRKFSVMASGSDEFVKGNVYPN--GVALITLDRPKALNAM 70


>At4g31810.1 68417.m04521 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 409

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 193 STASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFXEL 315
           S A +E+ +V V G  K+   I LN P +LNAL  P+   L
Sbjct: 35  SDADFED-QVLVEGKAKSRAAI-LNNPSSLNALSAPMVGRL 73


>At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolase,
           putative / CoA-thioester hydrolase, putative strong
           similarity to gi:8572760; contains Pfam profile PF00388
           enoyl-CoA hydratase/isomerase family protein
          Length = 422

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 226 VVGSKKNVGLIQLNRPKALNAL 291
           +V  K +V ++  NRPK LNAL
Sbjct: 52  LVEEKSSVRILTFNRPKQLNAL 73


>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
           contains similarity to 30S ribosomal protein S5
           GI:6969105 from [Campylobacter jejuni]
          Length = 515

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 199 ASYENIKVEVVGSKKNVGLIQLNRPKALNALCKP 300
           A ++NIK +V+GS+ +   ++    KALNA+  P
Sbjct: 466 AGFKNIKSKVIGSRNSYNTVKAVL-KALNAVETP 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,624,972
Number of Sequences: 28952
Number of extensions: 118072
Number of successful extensions: 280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)