Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C06f
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39920.1 68417.m05654 tubulin folding cofactor C / Porcino (P...    31   0.33 
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           27   7.1  
At4g34470.1 68417.m04901 E3 ubiquitin ligase SCF complex subunit...    26   9.4  

>At4g39920.1 68417.m05654 tubulin folding cofactor C / Porcino (POR)
           identical to tubulin-folding cofactor C (Porcino; POR)
           GI:20514261 from [Arabidopsis thaliana]; identical to
           cDNA tubulin folding cofactor C  GI:20514260
          Length = 345

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 28/139 (20%), Positives = 51/139 (36%)
 Frame = +3

Query: 12  INELQKYVVTSTFFLKEFNLRKFLGIVQNLQTKCYELEDRYVPRXXXXXXXXXXXXXHSQ 191
           I+ L+K +  +++FL  + +R  L IV +L+     L    VP+                
Sbjct: 97  IDNLEKLLAENSYFLPSYEVRSSLKIVSDLKQSLDILSGELVPKKKFSFKSKSTTKKPES 156

Query: 192 KQNLMDEADGAAKKDSNKWDENLFGFSSKXXXXXXXXXXXXYRRDVALRNLKNCTIGLKG 371
           K   + + D           ++  G  +K               +  L +L +C + L G
Sbjct: 157 KLPEIQKPDVVLPPKLVPVRDSP-GLRNKHGETLVKSFEGSSIGEFTLSDLDSCQVKLTG 215

Query: 372 LMGTLHLINLENCIXLSGP 428
            +  L L  L+ C   +GP
Sbjct: 216 TVNALFLHRLKKCSVYTGP 234


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 151 NFLRGTYLSSNS*HLVCKFCTMPRNFLKLNSLRKNVDVTT 32
           N LR +  ++ +  L+ +FC++ R FLK N L  + +  T
Sbjct: 311 NILRNSRYTTAAQELLEEFCSVGRGFLKKNKLGNSSNPNT 350


>At4g34470.1 68417.m04901 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At12), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
           thaliana]
          Length = 152

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 192 KQNLMDEADGAAKKDSNKWDE 254
           K+  +DEA+  +++D NKWDE
Sbjct: 60  KKYHVDEANPISEEDLNKWDE 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,739,564
Number of Sequences: 28952
Number of extensions: 126658
Number of successful extensions: 246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)