Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C02f
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p... 33 0.11
At5g16560.1 68418.m01938 myb family transcription factor (KAN1) ... 29 1.8
At1g70280.2 68414.m08086 NHL repeat-containing protein contains ... 29 2.4
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ... 29 2.4
At4g37710.1 68417.m05338 VQ motif-containing protein contains PF... 28 4.2
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 28 4.2
At5g15630.1 68418.m01829 phytochelatin synthetase family protein... 27 5.5
At4g09450.1 68417.m01555 myb family transcription factor contain... 27 5.5
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ... 27 7.3
At2g36310.1 68415.m04457 inosine-uridine preferring nucleoside h... 27 7.3
At2g19710.1 68415.m02303 expressed protein contains Pfam profi... 27 7.3
At2g07680.1 68415.m00992 ABC transporter family protein 27 7.3
At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C... 27 9.6
At4g31050.1 68417.m04409 lipoyltransferase (LIP2p) identical to ... 27 9.6
At4g17620.1 68417.m02636 glycine-rich protein 27 9.6
At2g47460.1 68415.m05923 myb family transcription factor (MYB12)... 27 9.6
At1g73700.1 68414.m08534 MATE efflux family protein similar to r... 27 9.6
>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
protein similar to thaumatin-like protein [Arabidopsis
thaliana] GI:2435406; contains Pfam profile PF00314:
Thaumatin family
Length = 193
Score = 33.1 bits (72), Expect = 0.11
Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 166 VLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASS 345
++A CT+S S + T S NF V+ +T + T+ G AL SS
Sbjct: 15 IIATCTISIVSGTV--------FTLSNRCNFTVWPGILTANRTLLRG---GGFALASGSS 63
Query: 346 VTRTVWPAAV--HRCKRPNTPITS 411
V TV P V HRCKR T TS
Sbjct: 64 VNLTVSPENVKMHRCKRSTTSHTS 87
>At5g16560.1 68418.m01938 myb family transcription factor (KAN1)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA GARP-like putative
transcription factor KANADI1 (KAN1) GI:15723590
Length = 403
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 321 ICTSESEFGNAYRLARSCPQVQ-APEHSHHQLHDASLPPPANRSS 452
I S S + NAYR +S P+++ P H HH + + ++ SS
Sbjct: 147 ILNSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSS 191
>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 509
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 285 EPYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAP 392
EPY LPNG++ +SE N Y+++ S P
Sbjct: 84 EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 119
>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 447
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 285 EPYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAP 392
EPY LPNG++ +SE N Y+++ S P
Sbjct: 22 EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 57
>At4g37710.1 68417.m05338 VQ motif-containing protein contains
PF05678: VQ motif
Length = 123
Score = 27.9 bits (59), Expect = 4.2
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -1
Query: 248 QVEAVSFNVAHLKFRCAEDHETVQ--*ANTDSVAWLTESEHILFDDRESFGS-SVQNSLS 78
+VE V+F V + A +HETVQ T A S FD S+G S QN +
Sbjct: 60 RVEPVNFKVLVQRLTGAPEHETVQAKPLKTSDDAAKQSSSSFAFDPSSSWGDFSFQNPAN 119
Query: 77 I 75
I
Sbjct: 120 I 120
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 365 PQLSTGASARTLPSPA-ARCIPPPA 436
P L A AR LP PA AR +PPPA
Sbjct: 541 PPLPPPARARPLPPPARARPMPPPA 565
>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
COBRA cell expansion protein COBL4 similar to
phytochelatin synthetase [Hordeum vulgare subsp.
vulgare] GI:29570314; identified in Roudier, et al,
Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 431
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 241 STWVNFAVF-SETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCT 417
S V+F+ F ++T+T + G ++S ++ S + + ++ K+ NTP+ CT
Sbjct: 216 SCCVSFSSFYNDTITPCPSCACGCENKKSCVKADSKI---LTKKGLNTPKKDNTPLLQCT 272
Query: 418 MHPSP 432
H P
Sbjct: 273 HHMCP 277
>At4g09450.1 68417.m01555 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 200
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 60 IELKENGQAILNGASKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFC 200
++L E G++ NG G P E++ F + N+ G G + +C
Sbjct: 74 VKLTEAGESKGNGKKTGIPWSEEEQRLFLEGLNKFGKGDWKNISRYC 120
>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 671
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 154 ATESVLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSETVT 282
AT ++L HC + +LN+RCA + T N V T+T
Sbjct: 201 ATGNLLYHCDIC--KFNLNMRCAIREPTPVALSNMKVHEHTLT 241
>At2g36310.1 68415.m04457 inosine-uridine preferring nucleoside
hydrolase family protein similar to Chain A, Crystal
Structure Of Nucleoside Hydrolase From Leishmania
MajorGI:8569431; contains Pfam profile PF01156:
Inosine-uridine preferring nucleoside hydrolase
Length = 336
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 345 GNAYRLARSCPQVQAPEHSHHQLHDASLPPPANRSS 452
G++ L P+V H + L D SLPPP+ + S
Sbjct: 85 GSSEPLKGGIPRVADFVHGKNGLGDVSLPPPSRKKS 120
>At2g19710.1 68415.m02303 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 937
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 469 ERRYSPEDLFAGGGRDASCS 410
ER +SPE+ +A GGR +S S
Sbjct: 238 ERHHSPENSYANGGRSSSRS 257
>At2g07680.1 68415.m00992 ABC transporter family protein
Length = 1194
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 127 FSMIGNPLEAPFRIACPFSFNSMIAPLLS 41
F+++G+ L+A C FNS+I+PL S
Sbjct: 276 FALMGHQLDAATVFTCLALFNSLISPLNS 304
>At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C,
putative contains PF00481: Protein phosphatase 2C
domain; similar to protein phosphatase 2C (GI:10432446)
[Nicotiana tabacum]
Length = 416
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 65 IERKWTGYSERSFQRIPD 118
+ERKW G +RSF+R+ +
Sbjct: 188 VERKWRGVMKRSFKRMDE 205
>At4g31050.1 68417.m04409 lipoyltransferase (LIP2p) identical to
lipoyltransferase (LIP2p) [Arabidopsis thaliana]
GI:15887052; supporting cDNA gi|15887051|dbj|AB072390.1|
Length = 278
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 246 LGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 362
+G ++GLL DG + DD RL + + EF A++L
Sbjct: 227 VGNIKGLLEDGEHGMVDDLRLIDIVHESLLKEFSEAFQL 265
>At4g17620.1 68417.m02636 glycine-rich protein
Length = 544
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 76 MDRLF*TELPKDSRSSKRMCSLSVNQATESVLAHCTVSWSSA 201
MD LF + DSRSS+ S S N ++ S + + S SSA
Sbjct: 10 MDDLFGEDSDNDSRSSRSKSSSSGNASSSSSSSSSSSSSSSA 51
>At2g47460.1 68415.m05923 myb family transcription factor (MYB12)
similar to myb-related DNA-binding protein GI:1020155
from [Arabidopsis thaliana]
Length = 371
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 345 GNAYRLARSCPQVQAPEHSHHQLHDAS 425
GN L +SCP V++ + HQ++DAS
Sbjct: 277 GNLDCLLQSCPSVESFLNYDHQVNDAS 303
>At1g73700.1 68414.m08534 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 77 WTGYSERSFQRIPDHRKGCVRFPS 148
WTG+S+ +FQ + D K + FPS
Sbjct: 235 WTGFSKEAFQELYDFSK--IAFPS 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,093,378
Number of Sequences: 28952
Number of extensions: 265862
Number of successful extensions: 928
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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