Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301B07f
(381 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 226 3e-60
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 226 3e-60
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 226 3e-60
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 226 3e-60
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 134 2e-32
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 117 2e-27
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 82 1e-16
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 76 9e-15
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 53 7e-08
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 53 7e-08
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 51 2e-07
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 50 4e-07
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 47 4e-06
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 42 1e-04
At5g13650.2 68418.m01585 elongation factor family protein contai... 40 6e-04
At5g13650.1 68418.m01584 elongation factor family protein contai... 40 6e-04
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 39 0.001
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 34 0.037
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 34 0.037
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 30 0.45
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 30 0.45
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 0.60
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 0.60
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 0.60
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 24 0.75
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 0.79
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 29 1.0
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 29 1.4
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 28 2.4
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 27 5.6
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 5.6
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 5.6
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 26 7.4
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi... 26 7.4
At5g46380.1 68418.m05708 hypothetical protein 26 9.7
At5g35160.1 68418.m04167 endomembrane protein 70, putative p76, ... 26 9.7
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 26 9.7
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 26 9.7
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 226 bits (553), Expect = 3e-60
Identities = 105/116 (90%), Positives = 109/116 (93%)
Frame = +3
Query: 30 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 209
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 210 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 226 bits (553), Expect = 3e-60
Identities = 105/116 (90%), Positives = 109/116 (93%)
Frame = +3
Query: 30 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 209
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 210 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 226 bits (553), Expect = 3e-60
Identities = 105/116 (90%), Positives = 109/116 (93%)
Frame = +3
Query: 30 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 209
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 210 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 226 bits (553), Expect = 3e-60
Identities = 105/116 (90%), Positives = 109/116 (93%)
Frame = +3
Query: 30 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 209
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 210 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 134 bits (324), Expect = 2e-32
Identities = 54/111 (48%), Positives = 84/111 (75%)
Frame = +3
Query: 45 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 224
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 225 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
ERERGIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++
Sbjct: 298 ERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVI 348
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 117 bits (282), Expect = 2e-27
Identities = 50/113 (44%), Positives = 79/113 (69%)
Frame = +3
Query: 39 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 218
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 219 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
+ ER +G T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL++
Sbjct: 158 EEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVI 210
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 81.8 bits (193), Expect = 1e-16
Identities = 44/117 (37%), Positives = 63/117 (53%)
Frame = +3
Query: 27 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 206
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE--------------- 116
Query: 207 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
+D ER RGITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 173
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 75.8 bits (178), Expect = 9e-15
Identities = 43/114 (37%), Positives = 61/114 (53%)
Frame = +3
Query: 36 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 215
+ K H+N+ IGHVD GK+T T + K E GK +DK
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDK 107
Query: 216 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
E++RGITI A ++ET+K + +D PGH D++KNMITG +Q D +L+V
Sbjct: 108 APEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVV 161
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 52.8 bits (121), Expect = 7e-08
Identities = 37/108 (34%), Positives = 53/108 (49%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 234 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
+GITI A Y V IID PGH DF + D A+L++
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVL 164
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 52.8 bits (121), Expect = 7e-08
Identities = 37/108 (34%), Positives = 53/108 (49%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 234 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
+GITI A Y V IID PGH DF + D A+L++
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVL 164
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 51.2 bits (117), Expect = 2e-07
Identities = 33/94 (35%), Positives = 49/94 (52%)
Frame = +3
Query: 42 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 221
K + NI ++ H+D+GK+TTT ++Y G K E+ +G+ W ++
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYK---------IGEVHEGTATMDW----ME 140
Query: 222 AERERGITIDIALWKFETSKYYVTIIDAPGHRDF 323
E+ERGITI A K+ + IID PGH DF
Sbjct: 141 QEQERGITITSAATTTFWDKHRINIIDTPGHVDF 174
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 50.4 bits (115), Expect = 4e-07
Identities = 34/108 (31%), Positives = 51/108 (47%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
NI ++ HVD GK+T HLI GG + GK F +D L E+
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG--------GVLHPRLAGKLRF-----MDYLDEEQR 57
Query: 234 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
R IT+ + + Y + +ID+PGH DF + T +D A+++V
Sbjct: 58 RAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLV 105
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 47.2 bits (107), Expect = 4e-06
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 234 RGITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
RGITI + + +E + + + +ID PGH DF + + + A+L+V
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVV 183
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 42.3 bits (95), Expect = 1e-04
Identities = 43/129 (33%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Frame = +3
Query: 18 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 197
D K EK N +I H+D GKST L+ G I K G G +Y
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY 102
Query: 198 AWVLDKLKAERERGITIDIALWKF---------ETSKYYVTIIDAPGHRDFIKNMITGTS 350
LDKL +RERGIT+ E S Y + +ID PGH DF + S
Sbjct: 103 ---LDKL--QRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLS 157
Query: 351 QADCAVLIV 377
A+L+V
Sbjct: 158 ACQGALLVV 166
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 39.9 bits (89), Expect = 6e-04
Identities = 32/108 (29%), Positives = 47/108 (43%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 85 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 129
Query: 234 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
RGITI V IID PGH DF + + D +L+V
Sbjct: 130 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVV 177
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 39.9 bits (89), Expect = 6e-04
Identities = 32/108 (29%), Positives = 47/108 (43%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 84 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 128
Query: 234 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
RGITI V IID PGH DF + + D +L+V
Sbjct: 129 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVV 176
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 39.1 bits (87), Expect = 0.001
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKG-SFKYAWVLDKLK 221
N+ VI HVD GKST T L+ G I + + + A E +G + K + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
Query: 222 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
E ++ + ++Y + +ID+PGH DF + D A+++V
Sbjct: 81 MTDE---SLKSFTGARDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.9 bits (74), Expect = 0.037
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 234 RGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
R I+I + L + Y I+D PGH +F M AD AVLIV
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIV 240
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.9 bits (74), Expect = 0.037
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 234 RGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
R I+I + L + Y I+D PGH +F M AD AVLIV
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIV 240
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 30.3 bits (65), Expect = 0.45
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Frame = +3
Query: 24 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 194
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 195 YAWVLDKLK---------AERERGITIDIALWKF--ETSKYYVTIIDAPGHRDFIKNMIT 341
Y DK + +E T D+ ++ T + +V+ +D PGH + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 342 GTSQADCAVLIV 377
G + D A+L++
Sbjct: 147 GAAIVDGALLLI 158
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 30.3 bits (65), Expect = 0.45
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Frame = +3
Query: 24 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 194
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 195 YAWVLDKLK---------AERERGITIDIALWKF--ETSKYYVTIIDAPGHRDFIKNMIT 341
Y DK + +E T D+ ++ T + +V+ +D PGH + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 342 GTSQADCAVLIV 377
G + D A+L++
Sbjct: 147 GAAIVDGALLLI 158
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 0.60
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 294 IIDAPGHRDFIKNMITGTSQADCAVLIV 377
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 0.60
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 294 IIDAPGHRDFIKNMITGTSQADCAVLIV 377
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 0.60
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 294 IIDAPGHRDFIKNMITGTSQADCAVLIV 377
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 24.2 bits (50), Expect(2) = 0.75
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Frame = +3
Query: 213 KLKAERERGITIDIALWKFET----SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
K+ A GIT I +K +D PGH F G D A+++V
Sbjct: 525 KVAASEAGGITQGIGAYKVSVPVDGKLQSCVFLDTPGHEAFGAMRARGARVTDIAIIVV 583
Score = 23.8 bits (49), Expect(2) = 0.75
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 57 IVVIGHVDSGKSTTTGHL 110
I ++GHVD GK+T ++
Sbjct: 504 ITIMGHVDHGKTTLLDYI 521
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 0.79
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 288 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 29.1 bits (62), Expect = 1.0
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Frame = +3
Query: 24 PKMGKEKTHINIVVIGHVDSGKST----TTG-HLIYKCGGIDKR-TIEKFEKEAQEMGKG 185
P++ + INI IGHV GKST +G H + +++ TI+ A+
Sbjct: 25 PEVISRQATINIGTIGHVAHGKSTIVKAVSGVHTVKFKSELERNITIKLGYANAKIYKCE 84
Query: 186 SFKYAWVLDKLKAERERGITIDIALWKFETSKY--YVTIIDAPGHRDFIKNMITGTSQAD 359
+ +E + D++ + K +V+ +D PGH + M+ G + D
Sbjct: 85 KCPRPVAYKSFGSGKEDNPSCDVSGHEKYKMKLLRHVSFVDCPGHDILMATMLNGAAIMD 144
Query: 360 CAVLIV 377
A+LI+
Sbjct: 145 GALLII 150
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 267 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
FE SK +V+ +D PGH + M+ G + D A+L++
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLI 152
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 288 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
+T +D PGH F + G + D VL+V
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVV 299
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 207 IPKHI*RILYPFPGPPSRTSRWYVC 133
+P H+ L GPPS +SR Y C
Sbjct: 110 LPSHVPTYLKAAVGPPSSSSRRYFC 134
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 176
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 176
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 377 YDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPE 258
+D+HS +L+ D + D + ++ N+VL F P+
Sbjct: 53 FDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPK 92
>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1322
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 368 HSAISLRGSCDHVLDEISVSRSINDGNI 285
HS ++ S +++LD + S S DGN+
Sbjct: 433 HSHLTFESSSENLLDAVVASMSNGDGNV 460
>At5g46380.1 68418.m05708 hypothetical protein
Length = 607
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Frame = -1
Query: 231 HAQPLVCPIPKHI*RILYPFP-----GPPSRTSRW 142
H +PLV P+P H R YP P GP +R+S +
Sbjct: 486 HLRPLVAPLPLH--RDSYPCPPTLAAGPYTRSSAY 518
>At5g35160.1 68418.m04167 endomembrane protein 70, putative p76,
Homo sapiens, EMBL:HSU81006
Length = 627
Score = 25.8 bits (54), Expect = 9.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 138 VCQYHHICRSSDQWWW 91
V Y H+C +WWW
Sbjct: 538 VLTYMHLCVEDYKWWW 553
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 362 AISLRGSCDHVLDEISVSRSINDGNIVLA 276
+I LRG+ HVLDE RS++D VL+
Sbjct: 367 SIVLRGASHHVLDE--AERSLHDALCVLS 393
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 365 SAISLRGSCDHVLDEISVSRSINDG 291
S + LRGS D +LD++ R+++DG
Sbjct: 376 STVVLRGSTDSILDDL--ERAVDDG 398
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,861,185
Number of Sequences: 28952
Number of extensions: 148263
Number of successful extensions: 484
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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