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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B01f
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54290.1 68414.m06189 eukaryotic translation initiation facto...   131   3e-31
At4g27130.1 68417.m03899 eukaryotic translation initiation facto...   129   1e-30
At5g54760.1 68418.m06820 eukaryotic translation initiation facto...   128   1e-30
At5g54940.2 68418.m06843 eukaryotic translation initiation facto...   124   3e-29
At5g54940.1 68418.m06842 eukaryotic translation initiation facto...   124   3e-29
At5g11900.1 68418.m01392 eukaryotic translation initiation facto...    35   0.025
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera...    34   0.057
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa...    30   0.70 
At2g15345.1 68415.m01755 expressed protein                             30   0.93 
At1g63430.1 68414.m07173 leucine-rich repeat transmembrane prote...    28   3.8  
At5g04780.1 68418.m00494 SEC14 cytosolic factor-related contains...    27   5.0  
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1...    27   5.0  
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro...    27   6.6  
At5g45360.1 68418.m05569 F-box family protein  similar to SKP1 i...    27   8.7  
At1g55620.2 68414.m06367 voltage-gated chloride channel family p...    27   8.7  
At1g55620.1 68414.m06366 voltage-gated chloride channel family p...    27   8.7  
At1g29710.1 68414.m03631 pentatricopeptide (PPR) repeat-containi...    27   8.7  
At1g04200.1 68414.m00410 expressed protein Contains similarity t...    27   8.7  

>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
           SUI1, putative similar to P|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score =  131 bits (316), Expect = 3e-31
 Identities = 59/110 (53%), Positives = 77/110 (70%)
 Frame = +2

Query: 83  MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 262
           + +Q    FDPFADA            VH+R+QQRNGRK+LTTVQGL  EY   KI++  
Sbjct: 4   LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDL 63

Query: 263 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
           KKEF CNGTVV+  E G+V+QLQGDQR+N+  +L ++GLVK + +K+HGF
Sbjct: 64  KKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score =  129 bits (311), Expect = 1e-30
 Identities = 58/102 (56%), Positives = 74/102 (72%)
 Frame = +2

Query: 107 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 286
           FDPFADA            VH+R+QQRNGRK+LTTVQGL  EY   KI++  KKEF CNG
Sbjct: 12  FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71

Query: 287 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
           TVV+  E G+V+QLQGDQR+N+  +L ++GLVK + +K+HGF
Sbjct: 72  TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score =  128 bits (310), Expect = 1e-30
 Identities = 58/102 (56%), Positives = 74/102 (72%)
 Frame = +2

Query: 107 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 286
           FDPFADA            VH+R+QQRNGRK+LTTVQGL  EY   KI++  KKEF CNG
Sbjct: 12  FDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71

Query: 287 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
           TVV+  E G+V+QLQGDQR+N+  +L ++GLVK + +K+HGF
Sbjct: 72  TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 112

 Score =  124 bits (299), Expect = 3e-29
 Identities = 53/110 (48%), Positives = 81/110 (73%)
 Frame = +2

Query: 83  MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 262
           + IQ  + +DPFA+A  S     ++  +H+RIQQRNG+K+LTTVQGL  EY  ++I++  
Sbjct: 4   LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62

Query: 263 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
           KK+F CNG VV+  E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 63  KKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112


>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 112

 Score =  124 bits (299), Expect = 3e-29
 Identities = 53/110 (48%), Positives = 81/110 (73%)
 Frame = +2

Query: 83  MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 262
           + IQ  + +DPFA+A  S     ++  +H+RIQQRNG+K+LTTVQGL  EY  ++I++  
Sbjct: 4   LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62

Query: 263 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
           KK+F CNG VV+  E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 63  KKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112


>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
           SUI1 family protein similar to SP|O43583
           Density-regulated protein (DRP1 protein) (Smooth muscle
           cell associated protein-3) {Homo sapiens}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 198

 Score = 35.1 bits (77), Expect = 0.025
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 185 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 361
           RN RK +T V+GL      L    +   K+FA   +VV+ P   E + +QGD   +I ++
Sbjct: 114 RNKRKCITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEF 173

Query: 362 LTKSGLVKPEQ 394
           +T +    PE+
Sbjct: 174 ITDTWPDVPER 184


>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 33.9 bits (74), Expect = 0.057
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
 Frame = +2

Query: 47  VSLKQRDPTFNRMSIQNLN--TF-DPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 208
           +S+  R    N  +++NL+  TF D F D + S+ DDVQ+ LVH    +RNG K L+
Sbjct: 41  LSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVHF---ERNGDKALS 94


>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
           profile PF01554: MatE Uncharacterized membrane protein
           family
          Length = 502

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -1

Query: 300 CSTTVP-LHANSFLHARTIFFRSYSEERP---CTVVSVL 196
           CS ++P L ANSFLH   I+ R      P   CT+VSVL
Sbjct: 150 CSFSLPDLLANSFLHPLRIYLRCKGTTWPLMWCTLVSVL 188


>At2g15345.1 68415.m01755 expressed protein
          Length = 121

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +2

Query: 158 GLVHVRIQQ--RNGRKTLTTVQGL--SSEYD-LKKIVRACKKEFACNGTVVE 298
           GLV++  QQ  R G K L  ++GL  +  Y  LKK  R+C KE+  +   +E
Sbjct: 3   GLVNMVYQQTERLGYKNLEMIKGLDRTENYSKLKKYYRSCVKEYELSNKAIE 54


>At1g63430.1 68414.m07173 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069
           Eukaryotic protein kinase domain, PF00560 Leucine Rich
           Repeat; contains 1 predicted transmembrane domain
          Length = 664

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 236 DLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENI 352
           ++    R    E+A NGT+ EH  YGE   +   +R  I
Sbjct: 429 EISPFTRMLVFEYASNGTLYEHLHYGEAALVSWARRMKI 467


>At5g04780.1 68418.m00494 SEC14 cytosolic factor-related contains
           Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; contains Pfam profile PF01535:
           PPR repeat (three copies)
          Length = 864

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -3

Query: 253 HDLLQVIFRGKALHRSQRLT-PVSLLDTDVD*TILNVVLRAFDSIGEWVECV-EILDG 86
           H++LQ+  R  A+  ++     +  +D + D T+LNV++ A+   G +VE   ++ DG
Sbjct: 57  HEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCG-FVELARQVFDG 113


>At1g27900.1 68414.m03419 RNA helicase, putative similar to
           SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
           HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 700

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 10  SDSYIVECVVSQRFVETKRPYVQSYVHPESQHIRPIRRCYQKLGGRRSRWFSPRPYPATK 189
           +D  +   VV    + T RP++++    +   + PI+R  +KL  R+    S  P P+ K
Sbjct: 604 NDGMMPNYVVYHELISTTRPFMRNVCAVDMAWVAPIKRKIEKLNVRK---LSGGPAPSFK 660


>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 384

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +2

Query: 146 DVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHP 304
           D +  ++H      N     T +Q LSSE  L KI     KEF C+G V   P
Sbjct: 269 DSERWILHSTPDYANSVIAKTGLQKLSSE-TLNKISEEMFKEFQCSGLVSSLP 320


>At5g45360.1 68418.m05569 F-box family protein  similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 316

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = -3

Query: 346 LSLVALKLQHLAVLRVLHDRTVAR--ELLLACPHDLLQVIFRGKALHRSQRLTPVSLLDT 173
           L+L + KL+  A  ++  DR      EL+  CP D  +     +A  RSQ   P  ++D 
Sbjct: 121 LTLPSRKLRESAWKKLYIDRDEQDMIELVRTCPSDFKEYYVHMQAAKRSQAPLPSQMVDD 180

Query: 172 DV--D*TILNVV 143
            +  D T+L  V
Sbjct: 181 RIILDNTVLEQV 192


>At1g55620.2 68414.m06367 voltage-gated chloride channel family
           protein contains Pfam profiles PF00654: Voltage gated
           chloride channel, PF00571: CBS domain
          Length = 781

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = -3

Query: 337 VALKLQHLAVLRVLHDRTV--ARELLLACPHDLLQVIFRGKALHRSQRLTPVSLLDTDVD 164
           ++ + Q   +L    D TV  A+EL+ A     L V+ RG+ +H+ +R   + LL  D  
Sbjct: 694 ISYRGQERGLLTCYPDATVGVAKELMEARGVKQLPVVKRGEVIHKGKRRKLLGLLHYDSI 753

Query: 163 *TILNVVLRAFDSIGEWVECVEI-LDGH 83
            T L   +    SI +  +  E+  +GH
Sbjct: 754 WTFLRDEMSRRRSINDRRKDKEVGTNGH 781


>At1g55620.1 68414.m06366 voltage-gated chloride channel family
           protein contains Pfam profiles PF00654: Voltage gated
           chloride channel, PF00571: CBS domain
          Length = 585

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = -3

Query: 337 VALKLQHLAVLRVLHDRTV--ARELLLACPHDLLQVIFRGKALHRSQRLTPVSLLDTDVD 164
           ++ + Q   +L    D TV  A+EL+ A     L V+ RG+ +H+ +R   + LL  D  
Sbjct: 498 ISYRGQERGLLTCYPDATVGVAKELMEARGVKQLPVVKRGEVIHKGKRRKLLGLLHYDSI 557

Query: 163 *TILNVVLRAFDSIGEWVECVEI-LDGH 83
            T L   +    SI +  +  E+  +GH
Sbjct: 558 WTFLRDEMSRRRSINDRRKDKEVGTNGH 585


>At1g29710.1 68414.m03631 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 475

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = -3

Query: 151 NVVLRAFDSI---GEWVECVEILD 89
           NV +  FDS+   G W E VE+LD
Sbjct: 85  NVTIETFDSLCIQGNWREAVEVLD 108


>At1g04200.1 68414.m00410 expressed protein Contains similarity to
           gb|Z69902 from C. elegans
          Length = 732

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 10  SDSYIVECVVSQRFVETKRPYVQSYVHPESQHIR-PIRRCYQKLG 141
           SD+   + + + R VE  R  V+   HP   H+R P    +  LG
Sbjct: 322 SDNTFSKALANARDVEFDRSDVEGNAHPAGPHVRIPFASLFDTLG 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,142,379
Number of Sequences: 28952
Number of extensions: 206700
Number of successful extensions: 673
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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